View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-18 (Length: 283)
Name: NF3892-Insertion-18
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-18 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 9313437 - 9313713
Alignment:
| Q |
7 |
agcattaaccgtggcgtttaaccattcacttcatccatccattcatttttgtgttccacttccatattgcgttgaaacatatattttgcactaatttatt |
106 |
Q |
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| T |
9313437 |
agcattaaccgtggcgtttaaccattcacttcatccatccattcattttcgtgttccacttccatattgcattgaagcatatattttgcactaatttatt |
9313536 |
T |
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| Q |
107 |
tacctccatagatatagtcattcataagttttactgggcaacttgcggaaaccaatattcctctccatttcaaaatcttccttctttcaattgattctgg |
206 |
Q |
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| T |
9313537 |
tacctccatagatatagtcattcataagttttactgagcaacttgcggaaaccaatattcctctccatttcagaatcttcattctttcaattgattctgg |
9313636 |
T |
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| Q |
207 |
atccaagcttattctagtatggttttgcaaatctggcgtgcattcaataattttggaacttatccttcgttgtgttt |
283 |
Q |
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| T |
9313637 |
atccaagcttattctagtatggttttgcaaatctggcgtgcattcaataattttggaacttatccttcgttgtgttt |
9313713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 180 - 283
Target Start/End: Original strand, 9289026 - 9289129
Alignment:
| Q |
180 |
aatcttccttctttcaattgattctggatccaagcttattctagtatggttttgcaaatctggcgtgcattcaataattttggaacttatccttcgttgt |
279 |
Q |
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| T |
9289026 |
aatcttccttcgatcaattgattctggatctgagcttattcttgtatggttttgcaaatctggcgtgcattcaataactttggaacttatccttcattgt |
9289125 |
T |
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| Q |
280 |
gttt |
283 |
Q |
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|||| |
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| T |
9289126 |
gttt |
9289129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 9288871 - 9288994
Alignment:
| Q |
7 |
agcattaaccgtggcgtttaaccattcacttcatccatccattcatttttgtgttccacttccatattgcgttgaaacatatattt-tgcactaatttat |
105 |
Q |
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| T |
9288871 |
agcattaaccgtggcatttaaccattctcttcatccatccattcattttcgtgttccacttccatattgcattgaagcatatgtttgtgcactaatttat |
9288970 |
T |
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| Q |
106 |
ttacctccat-agatatagtcatt |
128 |
Q |
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| T |
9288971 |
tcacctctataaaatatagtcatt |
9288994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 9076236 - 9076076
Alignment:
| Q |
126 |
attcataagttttactgggcaacttgcggaaaccaatattcctctccatttcaaaatcttccttctttcaattgattctggatccaagcttattctagta |
225 |
Q |
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| T |
9076236 |
attcacaagtttttctagccaactcggggaaaccaatatctctctccattcaacaatcttctttctttcaattgattatggatctaagcttatttttgta |
9076137 |
T |
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| Q |
226 |
tggttttgcaaatctggcgtgcattca-------ataattttggaacttatccttcgttgt |
279 |
Q |
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| T |
9076136 |
tggttttgcaaatttggtgtttattcaataaaatataattttggaacttatccttcgttgt |
9076076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 9064138 - 9064043
Alignment:
| Q |
126 |
attcataagttttactgggcaacttgcggaaaccaatattcctctccatttcaaaatcttccttctttcaattgattctggatccaagcttattct |
221 |
Q |
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| T |
9064138 |
attcacaagtttttctagccaactcggggaaaccgatattcctctccatttcagaatcttctttctttcatttgattatggatctaagctgattct |
9064043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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