View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-19 (Length: 302)
Name: NF3892-Insertion-19
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-19 |
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| [»] chr3 (8 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 10376860 - 10376554
Alignment:
| Q |
8 |
tatcattcaaacttcaaagatgccaattcctttagtctaatgtgtgtccacaaacaagcatttattttttctgttggatgatacatattatagataagaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10376860 |
tatcattcaaacttcaaagatgccaattcctttagtctaatgtgtgtccacaaacaagcatttattttttctgttggatgatacatattatagataagaa |
10376761 |
T |
|
| Q |
108 |
aagttatctatatgcacttc------------caaccattcaaaaacagcactgttaatgttatccattcactcactagcgagtcttctttgagtctttg |
195 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10376760 |
aagatatctatatgcacttctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcactcacaagcgagtcttctttgagtctttg |
10376661 |
T |
|
| Q |
196 |
ctccttactgctatccctaaatctttcatagctcttaatttccatcaaaattccgtactattatctacaacttccataccttagttgctgatttgctttt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10376660 |
ctccttactgctatccctaaatctttcatagctcttaatttccatcaaaattccatactattatctacaacttccataccttagttgctgatttgctttt |
10376561 |
T |
|
| Q |
296 |
acaagat |
302 |
Q |
| |
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||||||| |
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| T |
10376560 |
acaagat |
10376554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 10364800 - 10364510
Alignment:
| Q |
8 |
tatcattcaaacttcaaagatgccaattcctttagtctaatgtgtgtccacaaacaagcatttattttttctgttggatgatacatattatagataagaa |
107 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10364800 |
tatcattcaaacttcaaagatgccaattgctttagtctaatgtgggtccacaaacaagcatttattttttctgttggatgatacatattatagataagaa |
10364701 |
T |
|
| Q |
108 |
aagttatctatatgcacttccaaccattcaaaaacagcactgttaatgttatccattcactcactagcgagtcttctttgagtctttgctccttactgct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||| ||||||| | |
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| T |
10364700 |
aagttatctatatgcacttccaaccattcaaaaacagcactgttagtgttatccattcattcacaagcaagtcttctttgagtctttgctacttactgtt |
10364601 |
T |
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| Q |
208 |
atccctaaatctttcatagctcttaatttccatcaaaattccgtactattatctacaacttccataccttagttgctgatttgcttttacaa |
299 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||| |||||||| |||| |
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| T |
10364600 |
atcccttaatc-ttcatagctcttaatttccatcaaaattccatactattatctacaagtttcataccttagttgctggtttgctttaacaa |
10364510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 117 - 294
Target Start/End: Original strand, 10076431 - 10076618
Alignment:
| Q |
117 |
atatgcacttccaaccattcaaaaacagcactgttaatgttatccattcactcactagcgagtcttctttgagtcttt-----gctccttac------tg |
205 |
Q |
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||||||||||||||||| ||||||||||| |||||| ||||||||||||| |||| |||||||||||||||||||||| | ||| ||| | |
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| T |
10076431 |
atatgcacttccaaccactcaaaaacagcgctgttagtgttatccattcattcacaagcgagtcttctttgagtctttaacaagatccataccatagttt |
10076530 |
T |
|
| Q |
206 |
ctatccctaaatctttcatagctcttaatttccatcaaaattccgtactattatctacaacttccataccttagttgctgatttgcttt |
294 |
Q |
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|||||||| |||| ||||||||||||| |||||||||||||||| ||||||| ||||||| ||||||||||||||||||| |||||||| |
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| T |
10076531 |
ctatcccttaatc-ttcatagctcttactttccatcaaaattccatactattttctacaagttccataccttagttgctggtttgcttt |
10076618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 10434831 - 10434756
Alignment:
| Q |
222 |
catagctcttaatttccatcaaaattccgtactattatctacaacttccataccttagttgctgatttgcttttacaa |
299 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||| |||| |
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| T |
10434831 |
catagctcttaatttccatcaaaattca--actattatctacaacttccatacctttgttgctggtttgctttaacaa |
10434756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 9998779 - 9998811
Alignment:
| Q |
8 |
tatcattcaaacttcaaagatgccaattccttt |
40 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
9998779 |
tatcattcaaacttcaaagatgccaattgcttt |
9998811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 10108545 - 10108577
Alignment:
| Q |
8 |
tatcattcaaacttcaaagatgccaattccttt |
40 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
10108545 |
tatcattcaaacttcaaagatgccaattgcttt |
10108577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 10194961 - 10194989
Alignment:
| Q |
220 |
ttcatagctcttaatttccatcaaaattc |
248 |
Q |
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|
||||||||||||||||||||||||||||| |
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| T |
10194961 |
ttcatagctcttaatttccatcaaaattc |
10194989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 10229784 - 10229816
Alignment:
| Q |
8 |
tatcattcaaacttcaaagatgccaattccttt |
40 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
10229784 |
tatcattcaaacttcaaagatgccaattgcttt |
10229816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 198
Target Start/End: Complemental strand, 50644 - 50561
Alignment:
| Q |
115 |
ctatatgcacttccaaccattcaaaaacagcactgttaatgttatccattcactcactagcgagtcttctttgagtctttgctc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| | ||||||||||||||||| |||||| |
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| T |
50644 |
ctatatgcacttccaaccattcaaaaacagcactgtcagtgttatccattcattcacaaccgagtcttctttgagtcattgctc |
50561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 26825738 - 26825770
Alignment:
| Q |
8 |
tatcattcaaacttcaaagatgccaattccttt |
40 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
26825738 |
tatcattcaaacttcaaagatgccaattgcttt |
26825770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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