View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-20 (Length: 263)
Name: NF3892-Insertion-20
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-20 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 25 - 263
Target Start/End: Original strand, 4128632 - 4128870
Alignment:
| Q |
25 |
gtcatgtcacttgtgctggtaaaatttacatgcataaataaacacatttcacaaaattctagcaccatctatcatattcatatctcaaaaatggtttctt |
124 |
Q |
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| T |
4128632 |
gtcatgtcacttgtgctggtaaaatttacatgcataaataagcacatttcacaaaattctagcaccatctatcatattcatatctcaaaaatggtttctt |
4128731 |
T |
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| Q |
125 |
cttcttctaccttatacataattttcattctatttcttcaacttttgttagtctttggaaacgttactcgaagttctacactatctaccacaaccaacaa |
224 |
Q |
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| T |
4128732 |
cttcttctaccttatacataattttcattctatttcttcaacttttgttagtctttggaaacgttactcgaagttctacactatctaccacaaacaaaaa |
4128831 |
T |
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| Q |
225 |
ttcatggctatcaccttctggtgaatttgctttcgggtt |
263 |
Q |
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| T |
4128832 |
ttcatggctatcaccttctggtgaatttgctttcgggtt |
4128870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 260
Target Start/End: Original strand, 4105476 - 4105680
Alignment:
| Q |
57 |
cataaataaacacatttcacaaaattctagcaccatctatcatattcatatctcaaaaatggtttcttcttcttctaccttatacataattttcattcta |
156 |
Q |
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| T |
4105476 |
cataaacaaacacatttcacaaatttctaaaaccatctagc-tat-catttccaaaaaatgg---cgtcttcctctaccctttacataattgccattctt |
4105570 |
T |
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| Q |
157 |
tttcttcaacttttgttagtctttggaaacgttactcgaagttctacactatctaccac----aac--caacaattcatggctatcaccttctggtgaat |
250 |
Q |
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| T |
4105571 |
tttcttcaacttatattagcctttggaaacgtttctccaagttcaagactctccaccactaacaacaacaacaatccatggctatcaccttctggtgaat |
4105670 |
T |
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| Q |
251 |
ttgctttcgg |
260 |
Q |
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| T |
4105671 |
tcgctttcgg |
4105680 |
T |
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