View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-22 (Length: 781)
Name: NF3892-Insertion-22
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-22 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 528
Target Start/End: Original strand, 8691046 - 8691556
Alignment:
| Q |
7 |
agtttctaccgttgtttgatatggagttgaatctctgtgtttannnnnnnggagttagactctatttgaagaatcttatgtttattcttaataattgatg |
106 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691046 |
agtttctaccgttgtttgctatggagttgaatctctatgtttatttttttggagttagactctatttgaagaatcttatgtttattcttaataattgatg |
8691145 |
T |
|
| Q |
107 |
caccttctgtttatgc-ccttaatggtattttgaattaattatttactgttgtaaactagtaaattgttgcagccaatataatcaaaattattgacaaan |
205 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691146 |
caccttctgtttatgcaccttaatggtattttgaattaattatttactgttgtaaactagtaaattgttgcagccaatataatcaaaattattgacaaat |
8691245 |
T |
|
| Q |
206 |
nnnnnnaattttatgttgtcttgcaataaactgaatcaacctaaaccacattgatttggttggtatgatttatggcatgtttgcctaagcgttgggaaac |
305 |
Q |
| |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
8691246 |
ttttttaattttgtgttgtcttgcaacaaactgaatcaacctaaaccacattgatttggttggtatgatttatagcatgtttgcctcagcgttgggaaac |
8691345 |
T |
|
| Q |
306 |
ccacgttttctgtgaaccacgttttgaacctacattggaccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctca |
405 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
8691346 |
----------------ccacgttttgaacctacgttagaccaaaagcttcaattgctagcttttaaaaatcacggtagttttgccttggaaatcccct-a |
8691428 |
T |
|
| Q |
406 |
aacttgctattttgcttgcagactctaacccaaacaagcacttagtgttttt------nnnnnnnngtcaactaaatcgaaccaaactgcatatctttta |
499 |
Q |
| |
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||||||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |
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| T |
8691429 |
gacttgcttttttgcttgcagac-ccaacccaaacaagcacttagtgttttttttaaaaaaaaaaagtcaactaaatcaaaccaaactgcatatttttta |
8691527 |
T |
|
| Q |
500 |
ttttacgaattagataacttttagagaat |
528 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
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|
| T |
8691528 |
ttttacgatttagataacttttagagaat |
8691556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 541 - 764
Target Start/End: Original strand, 8691546 - 8691767
Alignment:
| Q |
541 |
ttttcgagaattggctaattgttttatgaaatttgtaaaattgctaatgaagggcaagtacaagacaaaaatattctcaaagattgnnnnnnnaaccaat |
640 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |
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| T |
8691546 |
ttttagagaattggctaattgttttatgaaatttgtaaaattgctaatgaagg-caagtacaagacaaaa-tattctcaaagattgtttttttaaccaat |
8691643 |
T |
|
| Q |
641 |
tggtgcttgactgattggcttcatcatctttctcaatatagaacaatgctttacatggcgacatttgatttaaacttccttctgctacctctattgtatg |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691644 |
tggtgcttgactgattggcttcatcatcttactcaatatagaacaatgctttacatggcgacatttgatttaaacttccttctgctacctctattgtatg |
8691743 |
T |
|
| Q |
741 |
tccttggcgataagctaagtactt |
764 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
8691744 |
tccttggcgataagctaagtactt |
8691767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 36113460 - 36113417
Alignment:
| Q |
161 |
actagtaaattgttgcagccaatataatcaaaattattgacaaa |
204 |
Q |
| |
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|||||| |||||||||||| |||||||||||||||||| ||||| |
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| T |
36113460 |
actagttaattgttgcagctaatataatcaaaattattaacaaa |
36113417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 3e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 275 - 449
Target Start/End: Original strand, 13337825 - 13337998
Alignment:
| Q |
275 |
ttatggcatgtttgcctaagcgttgggaaacccacgttttctgtgaaccacgttttgaacctacattggaccaaaagcttcaattgctagcttttaaaaa |
374 |
Q |
| |
|
|||| ||||||||| ||| |||||||| |||||||||||||||| |||||| ||||||||| || |||||||||||||||||||||||| |||||||||| |
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| T |
13337825 |
ttatagcatgtttgtctatgcgttggggaacccacgttttctgtaaaccacattttgaacccacgttggaccaaaagcttcaattgctaacttttaaaaa |
13337924 |
T |
|
| Q |
375 |
ttacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagcactta |
449 |
Q |
| |
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| | ||||||||||||||| |||||||| |||||||||| ||||||||| |||||| |||||||||||||||||| |
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| T |
13337925 |
tcatggtagttttgccttgaaaatcccc-caaacttgcttttttgcttgaagactccaacccaaacaagcactta |
13337998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 346 - 447
Target Start/End: Complemental strand, 36020349 - 36020249
Alignment:
| Q |
346 |
caaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagca |
445 |
Q |
| |
|
|||||||||||||||||||||||||||||| || | | |||||| ||| |||||||| ||||||| || ||||||||||| |||| | |||||||||||| |
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|
| T |
36020349 |
caaaagcttcaattgctagcttttaaaaatcactgcaattttgctttgaaaatcccc-caaacttacttttttgcttgcaaactccatcccaaacaagca |
36020251 |
T |
|
| Q |
446 |
ct |
447 |
Q |
| |
|
|| |
|
|
| T |
36020250 |
ct |
36020249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 345 - 449
Target Start/End: Complemental strand, 3268976 - 3268873
Alignment:
| Q |
345 |
ccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagc |
444 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||| | ||||| |||||||||||| |||||||| | ||||||||||| |||| | ||||||||||| |
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|
| T |
3268976 |
ccaaaagctccaattgctggcttttaaaaatcacggcaaatttgctttggaaatcccc-caaacttgtttttttgcttgcaaactccatcccaaacaagc |
3268878 |
T |
|
| Q |
445 |
actta |
449 |
Q |
| |
|
||||| |
|
|
| T |
3268877 |
actta |
3268873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 346 - 445
Target Start/End: Complemental strand, 26441980 - 26441882
Alignment:
| Q |
346 |
caaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagca |
445 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || | | || | | |||||||||||| |||||||||| ||||| ||||| |||| | |||||||||||| |
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|
| T |
26441980 |
caaaagctccaattgctagcttttaaaaatcactgcaattatactttggaaatcccc-caaacttgcttttttgtttgcaaactccatcccaaacaagca |
26441882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 345 - 430
Target Start/End: Complemental strand, 28040666 - 28040582
Alignment:
| Q |
345 |
ccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactc |
430 |
Q |
| |
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||||||| | ||||||||||||||||||||| | || | |||||| |||||||||||| |||||||||| ||||||||||| |||| |
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|
| T |
28040666 |
ccaaaagttccaattgctagcttttaaaaatcatggcaattttgctttggaaatcccc-caaacttgcttttttgcttgcaaactc |
28040582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 445
Target Start/End: Complemental strand, 38482243 - 38482144
Alignment:
| Q |
345 |
ccaaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagc |
444 |
Q |
| |
|
|||||| |||||||||||||||| ||||||| |||||| ||||| ||| |||| | ||||||| | || ||||||||||| ||| ||| |||||||||| |
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| T |
38482243 |
ccaaaaacttcaattgctagcttctaaaaatcacggtaattttgtcttaaaaat-ctctcaaacctacttttttgcttgcaaactttaatccaaacaagc |
38482145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 347 - 457
Target Start/End: Complemental strand, 8035677 - 8035569
Alignment:
| Q |
347 |
aaaagcttcaattgctagcttttaaaaattacggtagttttgccttggaaatcccctcaaacttgctattttgcttgcagactctaacccaaacaagcac |
446 |
Q |
| |
|
||||||||||| |||||||||||| |||| ||| ||||||| ||| |||| ||| ||||||||| ||| || ||| | |||| || ||||||| |||| |
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| T |
8035677 |
aaaagcttcaaatgctagcttttataaatcacgacggttttgctttgaaaat-cccacaaacttgcaattgtg-ttgtaaactccaaaccaaacaggcac |
8035580 |
T |
|
| Q |
447 |
ttagtgttttt |
457 |
Q |
| |
|
||||||||||| |
|
|
| T |
8035579 |
ttagtgttttt |
8035569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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