View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-26 (Length: 620)
Name: NF3892-Insertion-26
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-26 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 7 - 285
Target Start/End: Original strand, 28029392 - 28029678
Alignment:
| Q |
7 |
aacttgtttgtttgtggatataaagcagtgg----tttaatgactttacttttggagctatcctggaaagttcacaaattccatttccttgataagaagc |
102 |
Q |
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| T |
28029392 |
aacttgtttgtttgtggatataaagcagtggccggtttaatgactttacttttggagctatcctggaaagttcacaaattccatttccttgataagaagc |
28029491 |
T |
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| Q |
103 |
gttttttcttgtcgatatgactacgaaaatttccttgagaccaaatagttgcctcacacacagccac--ataatcta--ttatgaaattgccttataggt |
198 |
Q |
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| T |
28029492 |
gttttttcttgtcgatatgactacgaaaatttccttgagaccaaatagttgcctcacacacagccacatatagtctattttatgaaattgccttataggt |
28029591 |
T |
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| Q |
199 |
acaatcgtattattttctttggttaaccaaagttgtgagactccatcgtaatttttcttatgacgttagttaaacggatttttcatc |
285 |
Q |
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| T |
28029592 |
acaatcgtattattttctttggttaaccaaagttgtgagactccatcataatttttcttatgacgttagttaaacggatttttcatc |
28029678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 316 - 484
Target Start/End: Original strand, 28029673 - 28029847
Alignment:
| Q |
316 |
ttcatcgtaatactataatacatacataaagtataatatttgtaccgataaataaatatggagtgaagttgaaacgtgaaagtccatgcaagttaggtat |
415 |
Q |
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| T |
28029673 |
ttcatcgtaatactataatacatacataaagtataatatttgtaccgataaataaatatggagtgaagttgaaacgtgaaagtccatgcaagttaggtat |
28029772 |
T |
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| Q |
416 |
atcagaatatgtacaacaataaatcttgaaga------gaaaattctcgacagagggatttcattaatcaaatag |
484 |
Q |
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| T |
28029773 |
atcagaatatgtacaacaataaatcttgaagagaaaatgaaaattctcgacagagggatttcattaatcaaatag |
28029847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 513 - 620
Target Start/End: Original strand, 28029876 - 28029982
Alignment:
| Q |
513 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacattnnnnnnnggacagaaaatgagatcttaacttttacatgcctaa |
612 |
Q |
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| T |
28029876 |
gacatgtttaaaactaatctttcagctgttcactatgtacagatctaattaaacatt-aaaaaaggacagaaaatgagatcttaacttttacatgcctaa |
28029974 |
T |
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| Q |
613 |
cagttaga |
620 |
Q |
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| T |
28029975 |
tagttaga |
28029982 |
T |
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