View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-27 (Length: 500)
Name: NF3892-Insertion-27
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-27 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 443
Target Start/End: Complemental strand, 4358079 - 4357641
Alignment:
| Q |
8 |
caaatcaatcttaaaagttaaaccaacattacgttgaacctagtgaaatcggactcgaatttttaagcaatggctgacaannnnnnnn---gttgaaata |
104 |
Q |
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| T |
4358079 |
caaatcaatcttaaaagttaaaccaacattacgttgaacctagtgaaatcggactcgaatttttaagcaatggctgacaatttttttttttgttgaaata |
4357980 |
T |
|
| Q |
105 |
gtggatgcgagggccggggagacctaactaaatgatagggaagacaaaatacatcaattagatcaattttcacctttcgtgtcattaaccagtcaaaaaa |
204 |
Q |
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| T |
4357979 |
gtggatgcgagggctggggagacctaactaaatgatagggaagacaaaatacgtcaattagatcaattttcacctttcgtgtcattaaccagtcaaaaaa |
4357880 |
T |
|
| Q |
205 |
gaagtggatgggttaacttagtaggtgagttgaaactgccacacagagtccatctagtaacacgattgttcaatataagtcactcaaattactcaattga |
304 |
Q |
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| T |
4357879 |
gaagtggatgggttaacttagtaggtgagttgaaactgccacatagagcccatctagtaacacgattgttcaatataagtcactcaaattactcaattga |
4357780 |
T |
|
| Q |
305 |
tcgggtcataacccacgctcgatgaatatttttcgtgagtaaaactcgatcgcgactgtaacctttgaatggttatttttctgaaaatgtgagcaatttg |
404 |
Q |
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| T |
4357779 |
tcgggtcataacccaccctcgatgaatattttttgtgagtaaaactcgatcgcggctgtaacctttgaatggttatttttctgaaaatgtgagcagtttg |
4357680 |
T |
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| Q |
405 |
aggggcttttaccatcatataatgcaaaccacattcata |
443 |
Q |
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| T |
4357679 |
aggggctattaccatcatataatgcaaaccacactcata |
4357641 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 412
Target Start/End: Complemental strand, 9984709 - 9984675
Alignment:
| Q |
378 |
tatttttctgaaaatgtgagcaatttgaggggctt |
412 |
Q |
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| T |
9984709 |
tatttttctgaaattgtgagcaatttgaggggctt |
9984675 |
T |
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