View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-29 (Length: 305)
Name: NF3892-Insertion-29
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-29 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 9332636 - 9332933
Alignment:
| Q |
8 |
aaaaattgaccatgcaaatggaatcatttcaacaatttaacaaccatatatttgtacacatagaaattacaaaaatgttcaaattgaagtagacataaag |
107 |
Q |
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| T |
9332636 |
aaaaattgaccatgcaaatggaatcatttcaacaatttaacaaccatatatttgtacacatagaaattacaaaaatgttcaaattgaagttgacataaag |
9332735 |
T |
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| Q |
108 |
gacatttcatatacaaacaattttcatgtcttatgaaggattctatataagcattgtattcacatagtttctcttatcatcactatattcctcagctctt |
207 |
Q |
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| T |
9332736 |
gacatttcatacacaaacaaatttcatgtcttatgaaggattctatataagaattgtattcacatagtttctcttatcatcactatattcctcagctctt |
9332835 |
T |
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| Q |
208 |
atcttatccacgttttcttttttgttcaacatgttcaacaaatttgccctgcactgtctcttattctttatggttttctcatatctttttcttccatc |
305 |
Q |
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| T |
9332836 |
atcttatccacgttttcttttttgttcaacatgttcaacaaatttgccctgcactgcctcttattctttatggttttctcatatctttttcttccatc |
9332933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 9334581 - 9334623
Alignment:
| Q |
156 |
aagcattgtattcacatagtttctcttatcatcactatattcc |
198 |
Q |
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| T |
9334581 |
aagcattgtattcacatagtttctcctatcatcactatattcc |
9334623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 9334629 - 9334688
Alignment:
| Q |
230 |
tgttcaacatgttcaacaaatttgccctgcactgtctcttattctttatggttttctcat |
289 |
Q |
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| T |
9334629 |
tgttcaacatgttgaacaaatttcccctgcgcttcctctttttctttattgttttctcat |
9334688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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