View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-3 (Length: 587)
Name: NF3892-Insertion-3
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 7 - 587
Target Start/End: Original strand, 34890036 - 34890612
Alignment:
| Q |
7 |
attccgaacacatctgtatgacatttttcaattattggggatgaggatgtgtcccacaaagtttagtttatcattcactcgacatatctttttgtcgtgt |
106 |
Q |
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| T |
34890036 |
attccgaacacatctgtatgacatttttcaattattggggatgaggatgtgtcccacaaagtttagtttatcattcactcgacatatctttttgtcgtgt |
34890135 |
T |
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| Q |
107 |
gagacaaagatatgtgtcaagaagaaagtgacattttaaatttgatagattaagatacattatacatatac--aatacataataataatcattaacaatt |
204 |
Q |
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| T |
34890136 |
gagacaaagatatgagtcaagaagaaagtgacattttaaatttaatagattaagatacatcatacatatacataatacataataataatcattaacaatt |
34890235 |
T |
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| Q |
205 |
agaagtagatcttgcaatatactactgtatgagaaaatgtacatgtaagaatctagtaactctatctaaagtctagcttaatgagtaatttcaagattgt |
304 |
Q |
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| T |
34890236 |
agaagtagatcttgcaatatactactgtatgagaaaatgtacatgtaaaaatctagtaactctatctaaagtctagcttaataagtaatttcaagattgt |
34890335 |
T |
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| Q |
305 |
taattannnnnnncatgtgctcttattgaacgtaattttcttcttctagtacaattcatttaatgtaattcaatttggagggtatcaaattctagtacac |
404 |
Q |
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| T |
34890336 |
taattatttttttcatgtgctctcattgaacgtaatctttttcttctagtacaatccattgaatgtaattcaatttggagggtatcaaattctagtacac |
34890435 |
T |
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| Q |
405 |
ctctcaacnnnnnnnntctagtaaaatcctttgtcgtctatttggttaaatacgcttcataaaaagtatgagtttaacctttttattaaatgagctagac |
504 |
Q |
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| T |
34890436 |
ctctcaacaaaaaaaatctagtaaaatcc-ttatcgtctatttggttaaatacgcttcataaaaagtatgagtttaacctttttattagatgagctggac |
34890534 |
T |
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| Q |
505 |
gaaactatattttaaatatgttaaggtgtagatccccatacgtgacttgttttattttcactcctactctttatagtttggat |
587 |
Q |
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| T |
34890535 |
caaactatattttaaatatgttaaggtgtaaatccccatacctgacttg-----tttacactcctactctttatagcttggat |
34890612 |
T |
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