View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-30 (Length: 671)
Name: NF3892-Insertion-30
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-30 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 282; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 325 - 671
Target Start/End: Original strand, 18173001 - 18173338
Alignment:
| Q |
325 |
aactcttaatcaacttgtttgtgagttaaattaaaattgtttacaatgatgaaactattgaagtacacacttttggtgctaaggacttggaagaaaactt |
424 |
Q |
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|||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
18173001 |
aacttttaatcaacttgtttgtgagttagatt------gtttacaatgatgaaactattg---tacacatttttggtgctaaggacttggaagaaaactt |
18173091 |
T |
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| Q |
425 |
cactaaaaacactctctaataagtgagtcacgtgtcatatataaccccttaacctattttagtcaatgtgaaactagattcttttacactagaaatttca |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18173092 |
cactaaaaacactctctaataagtgagtcacgtgtcatatgtaaccccttaacctattttagtcaatgtgaaactagattcttttacactagaaatttca |
18173191 |
T |
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| Q |
525 |
acacaattatttcttccaaatgtgaattttgattttttgtgagagatgtttgtttgtattgaaattggcagattccttttgttccatatagggttaaggg |
624 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
18173192 |
acacaattatttctttcaaatgtgaattttgattttttgtgagagatgtttgtttgtattgaaattggcagattccttttgttccatatagggttaaagg |
18173291 |
T |
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| Q |
625 |
aatcaaagaatctaggactacatttttggtcccaggaccttaatgtt |
671 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
18173292 |
aatcaaagaatctaggactacatttttggtcccagggccttaatgtt |
18173338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 22 - 265
Target Start/End: Original strand, 18172632 - 18172876
Alignment:
| Q |
22 |
taaaactc-taagaattcaagatgaatttcacactcaccatataggtcaatatttcactttcatttcatttaatt-ttttatttgaaatattgaactatc |
119 |
Q |
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| T |
18172632 |
taaaactcgtaagaattcaagatgaatttcacactcaccatatagatcaatacttcactttcatt-catttatttattttatttgaaatattgaactatc |
18172730 |
T |
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| Q |
120 |
aagtccaaaaacaatgaaggacaatcacttcttgatggagcttttaaccgacttacaaatttggggttgacatagtagttggcttggaatcttgaagttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||| | | ||| ||| ||||||| |||||| ||| ||||||||| ||||| |||||| |||| |
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| T |
18172731 |
aagtccaaaaacaatgaaggacaatcacttcttgacgcaacttctaatcgacttatccatttggagttagtttagtagttgacttgggatcttggagttt |
18172830 |
T |
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| Q |
220 |
gtttctttcaaggtctcggattcgattcatcctggtgccaatttcg |
265 |
Q |
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| T |
18172831 |
gctcttttcaatgtctcaggtacaattcctcctggtaccaatttcg |
18172876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 27498929 - 27498837
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatggg |
270 |
Q |
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||||||||||||| |||| ||||||||||||||||| |||| | | || | ||||||| | |||||||| ||||||||||||||| |||| |
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| T |
27498929 |
atttggggttgacctagtggttggcttggaatcttggagtttgctcctctagaggtctcaggttcgattccctctggtgccaatttcggtggg |
27498837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 270
Target Start/End: Complemental strand, 32059638 - 32059546
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatggg |
270 |
Q |
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| T |
32059638 |
atttggggttggcctagtggttggcttgggatcttggagtttgctcctccaaaggtctcaggttcgattccttctggtgccaatttcggtggg |
32059546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 1486419 - 1486524
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatgggtaaattc |
277 |
Q |
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||||||||||||| |||| |||||||||| |||||| ||| | | || |||||||||| | |||||||| |||||||||||||||||||||| | | |
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| T |
1486419 |
atttggggttgacctagtggttggcttgggatcttggagtgc--tactctcaaggtctcaggttcgattccctttggtgccaatttcgatgggtaagtcc |
1486516 |
T |
|
| Q |
278 |
atacagag |
285 |
Q |
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|||||||| |
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| T |
1486517 |
atacagag |
1486524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 24216977 - 24217081
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatgggtaaattc |
277 |
Q |
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||||||||||||| |||| |||| ||||| |||||| ||| | | || |||||||||| | ||||||| |||||||||||||| ||||||||| | |
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| T |
24216977 |
atttggggttgacctagtggttgacttgggatcttggagtgtgctcctctcaaggtctcaggttcgattacctttggtgccaatttcggtgggtaaatcc |
24217076 |
T |
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| Q |
278 |
ataca |
282 |
Q |
| |
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||||| |
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| T |
24217077 |
ataca |
24217081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 285
Target Start/End: Complemental strand, 26169046 - 26168939
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatgggtaaattc |
277 |
Q |
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|||| |||||| | |||| ||| |||||| |||||| |||| | | || |||||||||| | || ||||| ||||| ||||||||||| |||| || ||| |
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| T |
26169046 |
atttagggttggcctagtggtttgcttgggatcttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaatttcggtgggcaagttc |
26168947 |
T |
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| Q |
278 |
atacagag |
285 |
Q |
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|||||||| |
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| T |
26168946 |
atacagag |
26168939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 285
Target Start/End: Original strand, 9208251 - 9208358
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatgggtaaattc |
277 |
Q |
| |
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||||||||||| |||| ||||| |||| |||||| |||| | | || |||||||||| | |||||||| |||||||||||||||| |||| || | | |
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| T |
9208251 |
atttggggttgttctagtggttggattgggatcttggagtttgctcctctcaaggtctcaggttcgattccccctggtgccaatttcggtgggcaagtcc |
9208350 |
T |
|
| Q |
278 |
atacagag |
285 |
Q |
| |
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|||||||| |
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| T |
9208351 |
atacagag |
9208358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 270
Target Start/End: Original strand, 19421234 - 19421326
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagttcgtttctttcaaggtctcggattcgattcatcctggtgccaatttcgatggg |
270 |
Q |
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||||||||||||| |||| |||||||||| |||||| |||| | | || | ||||||| | ||||||| | |||||| ||||||||||||| |
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| T |
19421234 |
atttggggttgacttagtggttggcttgggatcttggagtttgctcctctagaggtctcaggttcgatttcttctggtgtcaatttcgatggg |
19421326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 4567635 - 4567595
Alignment:
| Q |
178 |
atttggggttgacatagtagttggcttggaatcttgaagtt |
218 |
Q |
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||||||||||| | ||||||||||||||| ||||||||||| |
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| T |
4567635 |
atttggggttggcctagtagttggcttgggatcttgaagtt |
4567595 |
T |
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