View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-5 (Length: 250)
Name: NF3892-Insertion-5
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 47918668 - 47918435
Alignment:
| Q |
7 |
agtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtg-agaaaatggaaagnnnnnnntataatcttgatttatattactaa |
105 |
Q |
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| T |
47918668 |
agtttatacataaaaactctttcacttcagatagaattggacagaaataaatatacataaaa---aaa--------tataatcttgatttatattactaa |
47918580 |
T |
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| Q |
106 |
tactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctgaattatgccggaatggtcaccctttgagtgc |
205 |
Q |
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| T |
47918579 |
tactctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagcttaattagtacctgaattatgccggaatggtcaccctttgagtgc |
47918480 |
T |
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| Q |
206 |
ttttcgaacctttataggctcaacaggttcatctcccctattttg |
250 |
Q |
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| T |
47918479 |
ttttcgaacctttataggctcaacaggttcatctcccctattttg |
47918435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 29918496 - 29918694
Alignment:
| Q |
7 |
agtttatacataaaaactctttcacttcagatagaattggacagaaataaacgtgagaaaatggaaagnnnnnnntataatcttgatttatattactaat |
106 |
Q |
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|||||||||||||||| |||| ||||||| ||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||| |
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| T |
29918496 |
agtttatacataaaaagtctt-cacttcacatagaattggacataaataggtgtgagaaaatggaaa---ataatttgaatcttgatttatattactaat |
29918591 |
T |
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| Q |
107 |
actctgactgcaattttttataatatcatagattgcagcagcaatttcaaaagct---taattagtacctgaattatgccggaatggtcaccctttgagt |
203 |
Q |
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| T |
29918592 |
tctctaactgaatttttttataatttcatagatcacagcagcaatttcaaaagtttagtacttagtacctgaattatgccagcatggtcaccccttgagt |
29918691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 250
Target Start/End: Original strand, 29918750 - 29918797
Alignment:
| Q |
203 |
tgcttttcgaacctttataggctcaacaggttcatctcccctattttg |
250 |
Q |
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| T |
29918750 |
tgctttttgaacctttataggctcaacaggttcatcacccctattttg |
29918797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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