View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892-Insertion-7 (Length: 1000)
Name: NF3892-Insertion-7
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 618 - 980
Target Start/End: Complemental strand, 49979042 - 49978683
Alignment:
| Q |
618 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
717 |
Q |
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| T |
49979042 |
ggatatacatacatacattacagatagctagcgtgtctttatgataacaaaatatcactccattacataccatcttgaaatcgattgatcgttgaaggat |
49978943 |
T |
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| Q |
718 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgccgcccattgttactcatcatatg |
817 |
Q |
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| T |
49978942 |
gatgatctggaaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgccacatattgctgcccattgttactcatcatatg |
49978843 |
T |
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| Q |
818 |
actcacatgacggtaatcgtgaggaacc-aatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
916 |
Q |
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| T |
49978842 |
actcacatgacggtaatcgtgaggaaccaaatgtggagggaaagacataggccttgatggtgaagagtacagatattgttgaacttgagatgttgaggat |
49978743 |
T |
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| Q |
917 |
gaatgaacctgcagcagaagaaggatgttgggaaacctcaatggcattgttggggtgatgatga |
980 |
Q |
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| T |
49978742 |
g-atgaacctgcagcag-agaaggatgttgggaaa-ctcaatggcattgtt-gggtgatgatga |
49978683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 49979665 - 49979374
Alignment:
| Q |
8 |
gaagaaagggggtctgtgtttgtattatgtatggttttcgaactgataaggtttctagatatgcgttaagaagaaatttgattgatagtagaggcatgat |
107 |
Q |
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| T |
49979665 |
gaagaaagggggtctgtgtttgtattatgtatggttttcgaactgataaggtttctagatatgcgttaagaagaaatttgattgatagtagaggcatgat |
49979566 |
T |
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| Q |
108 |
tgattgtttgaatattctatgtatgag--tatgccggaaacactcagctggagtattcgacttttgttgtgatattaccttaattgtgcaagcatagtgt |
205 |
Q |
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| T |
49979565 |
tgattgtttgaatattctatgtatgagagtataccggaaacactcagctggagtattcgacttttgttgtgatattaccttaattgtgcaagcatagtgt |
49979466 |
T |
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| Q |
206 |
gacactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagaggtagatttttggatttttagtt |
297 |
Q |
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| T |
49979465 |
gacactgacatgatgagcatatcaagaaactagaatattctaattttggtttgactagagagagtgagaggtagatttttggatttttagtt |
49979374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 381 - 604
Target Start/End: Complemental strand, 49979290 - 49979068
Alignment:
| Q |
381 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcccacagctagaatccaaggtagccg |
480 |
Q |
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| T |
49979290 |
gaagtgacacaaactttcagttcatatccaacagcttgtttgttgttgtaccgaaccaacatataaaagacattcc-acagctagaatccaaagtagctg |
49979192 |
T |
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| Q |
481 |
aggttgtgaatgatctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagca |
580 |
Q |
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| T |
49979191 |
aggttgtgaatgagctcaaaagctgcagcacctagttactgttgttgctatctcttctttcttactcatgatgagtcataaccctagctatctgtcagca |
49979092 |
T |
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| Q |
581 |
ccttaattaattatgaatcatcta |
604 |
Q |
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| T |
49979091 |
ccttaattaattatgaatcatcta |
49979068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 728 - 784
Target Start/End: Original strand, 49952122 - 49952178
Alignment:
| Q |
728 |
aaaaccttgtccaaccggtgcacctatgcacgtgtaacttgactcacctccacctgc |
784 |
Q |
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| T |
49952122 |
aaaaccttgtctaaccggtgcacctatgcaagtgtaacttgactcaccaccacctgc |
49952178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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