View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892-Insertion-8 (Length: 888)
Name: NF3892-Insertion-8
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892-Insertion-8 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 8 - 723
Target Start/End: Complemental strand, 41966761 - 41966065
Alignment:
| Q |
8 |
taacaatggctccattttccttgctgcatgttcaaaaggcttctcatcttgatacacatgggtgtgatataatatgatattaggatttacatcaaagtcg |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41966761 |
taacaatggctccattttccttgctgcatgttgaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattaggatttacatcaaagtcg |
41966662 |
T |
|
| Q |
108 |
gtagtaagagaatgatcttcttttccttcacctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgttcattcatcttattct |
207 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41966661 |
gtagtaaaagaatgatcttcttttccttcatctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgttcattcatcttattct |
41966562 |
T |
|
| Q |
208 |
tccaatagtctcctaaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaatagagttggtgtatatttagtt |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41966561 |
tccaatagtctcctaaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaatagagttggtgtatatttagtt |
41966462 |
T |
|
| Q |
308 |
tcacttttggagacgacaaaattgatgtagaattgattttgatatatttaaatatgtttgcatataattgaatttacctcaagaaccgattataactcag |
407 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||| |
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| T |
41966461 |
tcacttttagagacgacaaaattgatgtagaattaattttgatatatttaaatatgtttgcgtataattgaatttacctcaagaactgattatagctca- |
41966363 |
T |
|
| Q |
408 |
aacacaaaatttaaagtttttgcttcttcaattgaattttaacatcaaatttattgttgcttcaattcacattgattcaagtcataactcgtttttagta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
41966362 |
aacacaaaatttaaagtttttgcttcttcaattgaattttaacatcaaatttattgtttcttcaattcacattgattcaagtcataactcatttttagta |
41966263 |
T |
|
| Q |
508 |
gaaaccaatttttcaaaatcaactaattcaaagtcaannnnnnnncaccgcataatcaaacacatacttgaatgataaaatgaattgaacttctatagag |
607 |
Q |
| |
|
||| ||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
41966262 |
aaaaacaattttacaaaatcaactaattcaaattcaattttttttcaccgcataatcaaacacatact----tgataaaatgaattgaa----------- |
41966178 |
T |
|
| Q |
608 |
ctgcttcggcaagaaaaacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatcctta |
707 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41966177 |
---cttcggcaagaaaaacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatcctta |
41966081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 772 - 873
Target Start/End: Original strand, 37701309 - 37701409
Alignment:
| Q |
772 |
tataagactacattacttaaacagagaagttcaa-gtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg |
870 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37701309 |
tataagactacattactcaaa--gagaagttcaaagtacaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg |
37701406 |
T |
|
| Q |
871 |
cac |
873 |
Q |
| |
|
||| |
|
|
| T |
37701407 |
cac |
37701409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 772 - 888
Target Start/End: Original strand, 37439639 - 37439756
Alignment:
| Q |
772 |
tataagactacattacttaaacagagaagttcaagt-acaagcaaccgtatctatattttttaaagacttgcatcaaattaattcattctcggcgatttg |
870 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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|
| T |
37439639 |
tataagactacattactcaaacagagaagttcaaattacaaacaaccgtatctatattttttaaagacttgcatcaaattaattcattctatgtgatttg |
37439738 |
T |
|
| Q |
871 |
cacggactcaattgtttg |
888 |
Q |
| |
|
|| || ||||||||||| |
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|
| T |
37439739 |
caagggatcaattgtttg |
37439756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 752
Target Start/End: Original strand, 37701257 - 37701290
Alignment:
| Q |
719 |
ataataattttaaaagatataagactactctgtc |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37701257 |
ataataattttaaaagatataagactactctgtc |
37701290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 1228122 - 1227849
Alignment:
| Q |
8 |
taacaatggctccattttccttgctgcatgttcaaaaggcttctcatcttgatacacatgggtgtgatataatatgatattaggatttacatcaaagtcg |
107 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1228122 |
taacaatgactccattttccttgctgcatgttcaaaaggcttctcatcttgatgcacatgggtgtgatataatatgatattaggatttacatcaaagtcg |
1228023 |
T |
|
| Q |
108 |
gtagtaagagaatgatcttcttttccttcacctaatgcttttggaacttgaataaggtttttaattgcttcaggcataggttgttcattcatcttattct |
207 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
1228022 |
gtagtaaaagaatgatcttcttttccttcacctaatgcttttggaacttgaataaagtttttaattgcttcaggcataggttgcttattcatcttattct |
1227923 |
T |
|
| Q |
208 |
tccaatagtctcctaaatcttttcttgcatagctcaggttagcaacctatataataatttcaacagagataaagttaa |
285 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||| |
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|
| T |
1227922 |
tccaaaggtctcctagatcttttcttgcatagctcatgttagcaacctat----tcatttcaacagagataaagttaa |
1227849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 327 - 480
Target Start/End: Complemental strand, 1227832 - 1227680
Alignment:
| Q |
327 |
aattgatgtagaattgattttgatatatttaaatatgtttgcatataattgaatttacctcaagaaccgattataactcagaacacaaaatttaaagttt |
426 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| |
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|
| T |
1227832 |
aattgatgtaaaattgattttgatatatttaaatgtgttcgcgtataattgaatttacctcaaaaaccgattataactc-gaagacaaaatttaaagttt |
1227734 |
T |
|
| Q |
427 |
ttgcttcttcaattgaattttaacatcaaatttattgttgcttcaattcacatt |
480 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
1227733 |
ttgcttctacaattgatttttagcatcaaatttattgttacttcaattcacatt |
1227680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 624 - 721
Target Start/End: Complemental strand, 1227546 - 1227450
Alignment:
| Q |
624 |
aacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatggaatccttagtatcttgattata |
721 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||| |
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|
| T |
1227546 |
aacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtgttgaa-ccttagtatctagattata |
1227450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 54435263 - 54435306
Alignment:
| Q |
63 |
acatgggtgtgatataatatgatattaggatttacatcaaagtc |
106 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
54435263 |
acatgggtgtgatataatatgacattaggctttacatcaaagtc |
54435306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 544
Target Start/End: Complemental strand, 1227649 - 1227604
Alignment:
| Q |
499 |
tttttagtagaaaccaatttttcaaaatcaactaattcaaagtcaa |
544 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
1227649 |
tttttaatagaaaccaattttacaaaatcaactaattcaaaatcaa |
1227604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 26235689 - 26235756
Alignment:
| Q |
171 |
attgcttcaggcataggttgttcattcatcttattcttccaatagtctcctaaatcttttcttgcata |
238 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||| |||| || |||||||||||||| |
|
|
| T |
26235689 |
attgcttcaggcataggttggtcattcatcatattcttccaataacctcccaagtcttttcttgcata |
26235756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 26235599 - 26235642
Alignment:
| Q |
63 |
acatgggtgtgatataatatgatattaggatttacatcaaagtc |
106 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
26235599 |
acatgtgtgtgatataatatgacattaggctttacatcaaagtc |
26235642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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