View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_10 (Length: 565)

Name: NF3892_high_10
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_10
NF3892_high_10
[»] chr5 (6 HSPs)
chr5 (45-165)||(8466623-8466743)
chr5 (399-496)||(8467399-8467496)
chr5 (290-369)||(8467320-8467399)
chr5 (196-274)||(8467198-8467276)
chr5 (14-51)||(8465043-8465080)
chr5 (161-199)||(8467152-8467190)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 9e-50; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 45 - 165
Target Start/End: Original strand, 8466623 - 8466743
Alignment:
Q  45 tagatatgagtgtttaataaacattgcctacgtagaaaacttaaaagttgctgagtattgaaatgtcaccgttcatctcaaagaatgaactttccctgag 144  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  8466623 tagatatgaatgtttaataaacattacctacgtagaaaacttaaaagttgttgagtattgaaatgtcaccggtcatctcaaagaatgaacttttcctgag 8466722  T
Q  145 ttaagatgctcagataaatta 165  Q
    |||||||||||||||||||||    
T  8466723 ttaagatgctcagataaatta 8466743  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 399 - 496
Target Start/End: Original strand, 8467399 - 8467496
Alignment:
Q  399 tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttccatttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8467399 tgcagcattagcttttctacccctcttattagtagtagacttaatggacttgctcttcttattcacaaccttcttcttaccaccaaccgttgcatttg 8467496  T

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Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 290 - 369
Target Start/End: Original strand, 8467320 - 8467399
Alignment:
Q  290 tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467320 tagctgcgagtactacaaagagacttcaggccaaaaaacagttatcatattcacacatactatattacatagtttcagtt 8467399  T

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Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 8467198 - 8467276
Alignment:
Q  196 attagtccgcacattctcaatgatacaggaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc 274  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8467198 attagtccgcacattctcaatgatacagaaaattcatcccacaatttaaatcagaacaaaaatagcaaaaggatgtctc 8467276  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 8465043 - 8465080
Alignment:
Q  14 cctttttcttcctttctctcgatgtgtagaatagatat 51  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8465043 cctttttcttcctttctctcgatgtgtagaatagatat 8465080  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 8467152 - 8467190
Alignment:
Q  161 aattattaatacatgcactttgattgtcacagtgaatta 199  Q
    |||||||||||| |||||||||||||||| |||||||||    
T  8467152 aattattaatacttgcactttgattgtcatagtgaatta 8467190  T

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