View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_106 (Length: 250)
Name: NF3892_high_106
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_106 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29818548 - 29818304
Alignment:
| Q |
1 |
aaaatttatcaatccttgctttaaaaggaacagatataagaaaactgcccttatcacttggaagcctagttggacttactaatttgaacttaaaggactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29818548 |
aaaatttatcaatccttgctttaaaaggaacagatataagaaaactgcccttatcacttggaagcctagttggacttactaatttgaacttaaaggactg |
29818449 |
T |
|
| Q |
101 |
caaaagtcttgtttgccttccggataccattcatggattgaattccctcataattttgaacatttctggatgttcaagactttgtagattgccagatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29818448 |
caaaagtcttgtttgccttccggataccattcatggattgaattccctcataattttgaacatttctggatgttcaagactttgtagattgccagatgga |
29818349 |
T |
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| Q |
201 |
ttaaaggaaatacagtgtttgaaggaacttcatgcctatgctact |
245 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
29818348 |
ttaaaggaaatacagtgtttgaaggaacttcatgccaatgatact |
29818304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 29573595 - 29573839
Alignment:
| Q |
1 |
aaaatttatcaatccttgctttaaaaggaacagatataagaaaactgcccttatcacttggaagcctagttggacttactaatttgaacttaaaggactg |
100 |
Q |
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||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
29573595 |
aaaatttatcaatgcttgctttagaaggaacagatataagaaaactgcccttatcacttggaagactagtcggacttactaatttgaacttaaaggactg |
29573694 |
T |
|
| Q |
101 |
caaaagtcttgtttgccttccggataccattcatggattgaattccctcataattttgaacatttctggatgttcaagactttgtagattgccagatgga |
200 |
Q |
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|||||| || ||||| ||||| ||||||||||||||||||||||||||||||| | || ||||||| ||||| |||| |||||||||| |||||||||| |
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| T |
29573695 |
caaaagcctggtttgtcttccagataccattcatggattgaattccctcataactctggacatttcaggatgctcaaaactttgtagactgccagatggt |
29573794 |
T |
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| Q |
201 |
ttaaaggaaatacagtgtttgaaggaacttcatgcctatgctact |
245 |
Q |
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||||||||||| |||||||| ||||||| |||||| ||| |||| |
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| T |
29573795 |
ttaaaggaaatcaagtgtttggaggaactccatgccaatgatact |
29573839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 29596443 - 29596199
Alignment:
| Q |
1 |
aaaatttatcaatccttgctttaaaaggaacagatataagaaaactgcccttatcacttggaagcctagttggacttactaatttgaacttaaaggactg |
100 |
Q |
| |
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||||| |||| || ||||| ||| |||||| || ||| ||||| || |||| |||||| |||||||||||||||||| ||| ||| ||||||||| |||| |
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| T |
29596443 |
aaaatctatcgatgcttgccttagaaggaatagctattagaaacctaccctcatcactaggaagcctagttggacttgctagtttaaacttaaagaactg |
29596344 |
T |
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| Q |
101 |
caaaagtcttgtttgccttccggataccattcatggattgaattccctcataattttgaacatttctggatgttcaagactttgtagattgccagatgga |
200 |
Q |
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||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29596343 |
caaaagtcttgtttgccttccagataccattcatcgattgaattctctcataattttgaacatttccggatgttcaagactttgtagattgccagatgga |
29596244 |
T |
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| Q |
201 |
ttaaaggaaatacagtgtttgaaggaacttcatgcctatgctact |
245 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||| |||| |
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| T |
29596243 |
ttaaaggaaataaagtgtttgaaggaacttcatgccaatgatact |
29596199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 29826800 - 29826566
Alignment:
| Q |
1 |
aaaatttatcaatccttgctttaaaaggaacagatataagaaaactgcccttatcacttggaagcctagttggacttactaatttgaacttaaaggactg |
100 |
Q |
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||||| ||||||||||||||||| ||||||||| | |||| || || ||| |||||||||| ||||||||||||||||| |||||||||| |||||||| |
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| T |
29826800 |
aaaatctatcaatccttgctttacaaggaacagctttaaggaatctaacctcatcacttggacgcctagttggacttactgatttgaacttgaaggactg |
29826701 |
T |
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| Q |
101 |
caaaagtcttgtttgccttccggataccattcatggattgaattccctcataattttgaacatttctggatgttcaagactttgtagattgccagatgga |
200 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||| | |||||||| || |||| ||| ||||||||||||||||| |
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| T |
29826700 |
caaaagtcttgtttgtcttccagataccattcatggattgaattccctcagagttttggatatttctgggtgctcaaaactgtgtagattgccagatggt |
29826601 |
T |
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| Q |
201 |
ttaaaggaaatacagtgtttgaaggaacttcatgc |
235 |
Q |
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||||||||||| |||||||| ||||||| ||||| |
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| T |
29826600 |
ttaaaggaaatcaagtgtttggaggaactccatgc |
29826566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 29754316 - 29754405
Alignment:
| Q |
61 |
gaagcctagttggacttactaatttgaacttaaaggactgcaaaagtcttgtttgccttccggataccattcatggattgaattccctca |
150 |
Q |
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|||||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29754316 |
gaagcctagttggactcactaatttaaacttaaagaactgaaaaagtcttgtttgccttccagataccattcatggattgaattccctca |
29754405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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