View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_109 (Length: 248)
Name: NF3892_high_109
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_109 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3227901 - 3227673
Alignment:
| Q |
1 |
cctaaaaatggttgtaaaatattcattaataacactttaattaataataatttatcaaattttaacatttctgttgtacaacataaaacttgtctttttg |
100 |
Q |
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| T |
3227901 |
cctaaaaatggttgtaaaatattcattaataacactttaattaataataatttatcaaattttaacatttctgttgtacaacataaaacttgtctttttg |
3227802 |
T |
|
| Q |
101 |
tggataacttcacatatggcaatgttggggagatatgtccagaaaaatagatgtaccaatgtacatcatagctgttactagcagttagcaccatatcaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
3227801 |
tggataacttcacatatggcaatgttggggagatatgtccagaaaaatagatgtaccaatgtacatcatagttgttactagcagttagcaccataccaca |
3227702 |
T |
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| Q |
201 |
tccatacaaattaacaccaaatatatagc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3227701 |
tccatacaaattaacaccaaatatatagc |
3227673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Original strand, 3177061 - 3177155
Alignment:
| Q |
130 |
gagatatgtccagaaaaatagatgtaccaatgtacatcatagctgttactagcagttagcaccatatcacatccatacaaattaacaccaaatatatag |
228 |
Q |
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| T |
3177061 |
gagatatatccagaaaaatagatgtacc-atgtgcaacatagc---tattagcagttagcaccggaccaaatacatacaaattaacatcacatatatag |
3177155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 228
Target Start/End: Complemental strand, 3241777 - 3241683
Alignment:
| Q |
130 |
gagatatgtccagaaaaatagatgtaccaatgtacatcatagctgttactagcagttagcaccatatcacatccatacaaattaacaccaaatatatag |
228 |
Q |
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| T |
3241777 |
gagatatatccagaaaaatagatgtacc-atgtgcaacatagc---tattagcagttagcaccggaccaaatacatacaaattaacatcacatatatag |
3241683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 48
Target Start/End: Complemental strand, 52678034 - 52677996
Alignment:
| Q |
10 |
ggttgtaaaatattcattaataacactttaattaataat |
48 |
Q |
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| T |
52678034 |
ggttgtaaaattttcattaatatcactttaattaataat |
52677996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 11381939 - 11381983
Alignment:
| Q |
10 |
ggttgtaaaatattcattaataacactttaattaataataattta |
54 |
Q |
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| T |
11381939 |
ggttgtaaaataatcattagtatcactttaattaataatatttta |
11381983 |
T |
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