View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_113 (Length: 245)

Name: NF3892_high_113
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_113
NF3892_high_113
[»] chr6 (13 HSPs)
chr6 (15-184)||(12256293-12256459)
chr6 (181-245)||(12256483-12256547)
chr6 (181-242)||(17935735-17935797)
chr6 (181-223)||(12582241-12582283)
chr6 (181-242)||(20744144-20744206)
chr6 (181-245)||(5937638-5937703)
chr6 (181-217)||(21296764-21296801)
chr6 (181-217)||(26320581-26320618)
chr6 (181-217)||(30579865-30579902)
chr6 (181-217)||(247666-247702)
chr6 (185-244)||(12735234-12735294)
chr6 (185-217)||(31895299-31895331)
chr6 (181-217)||(33976251-33976287)
[»] chr2 (11 HSPs)
chr2 (181-242)||(7350552-7350614)
chr2 (181-213)||(21929477-21929509)
chr2 (181-235)||(4122013-4122068)
chr2 (183-231)||(833073-833122)
chr2 (182-242)||(23407011-23407072)
chr2 (181-221)||(41187471-41187512)
chr2 (181-217)||(3708700-3708736)
chr2 (181-217)||(11868680-11868716)
chr2 (181-217)||(35360073-35360109)
chr2 (185-228)||(41859862-41859906)
chr2 (181-220)||(43424665-43424705)
[»] chr3 (17 HSPs)
chr3 (181-245)||(15873031-15873095)
chr3 (181-229)||(21506764-21506813)
chr3 (181-228)||(32843269-32843317)
chr3 (181-242)||(52575953-52576015)
chr3 (186-242)||(2153494-2153551)
chr3 (181-221)||(3100227-3100268)
chr3 (181-217)||(7202934-7202971)
chr3 (181-217)||(14827531-14827568)
chr3 (181-221)||(24428487-24428528)
chr3 (181-217)||(25340942-25340979)
chr3 (181-217)||(32629086-32629123)
chr3 (181-217)||(44579642-44579679)
chr3 (181-245)||(46298045-46298110)
chr3 (181-217)||(916446-916482)
chr3 (181-228)||(25441507-25441555)
chr3 (181-216)||(32836179-32836215)
chr3 (181-228)||(53996305-53996353)
[»] chr1 (15 HSPs)
chr1 (181-244)||(22346682-22346746)
chr1 (181-220)||(14520950-14520990)
chr1 (181-236)||(25086489-25086545)
chr1 (181-242)||(48100728-48100790)
chr1 (181-245)||(18166608-18166673)
chr1 (181-217)||(23203328-23203365)
chr1 (181-221)||(26803465-26803506)
chr1 (181-217)||(42888581-42888618)
chr1 (181-245)||(44860873-44860938)
chr1 (181-217)||(47835813-47835850)
chr1 (181-217)||(50040362-50040399)
chr1 (189-245)||(6267429-6267485)
chr1 (181-228)||(12364112-12364160)
chr1 (181-228)||(29233981-29234029)
chr1 (181-228)||(40227835-40227883)
[»] chr8 (15 HSPs)
chr8 (181-242)||(18638106-18638168)
chr8 (181-241)||(8137941-8138002)
chr8 (185-232)||(498741-498789)
chr8 (181-245)||(14327197-14327261)
chr8 (185-242)||(32944833-32944891)
chr8 (181-217)||(2508611-2508648)
chr8 (181-217)||(8461854-8461891)
chr8 (181-245)||(24023405-24023470)
chr8 (181-241)||(37938501-37938562)
chr8 (181-217)||(20665381-20665417)
chr8 (189-217)||(22504308-22504336)
chr8 (182-217)||(24838188-24838224)
chr8 (181-217)||(30550744-30550780)
chr8 (185-220)||(40399991-40400027)
chr8 (181-217)||(44215493-44215529)
[»] chr4 (18 HSPs)
chr4 (181-221)||(36061409-36061450)
chr4 (181-228)||(15849240-15849288)
chr4 (181-228)||(16431622-16431670)
chr4 (181-228)||(32180836-32180884)
chr4 (181-235)||(48226498-48226553)
chr4 (182-228)||(52132309-52132356)
chr4 (181-242)||(9946433-9946495)
chr4 (180-214)||(37253844-37253878)
chr4 (181-221)||(10497265-10497306)
chr4 (181-217)||(28031818-28031855)
chr4 (185-242)||(35576558-35576615)
chr4 (181-217)||(10261787-10261823)
chr4 (181-217)||(21562632-21562668)
chr4 (181-217)||(24079858-24079894)
chr4 (181-217)||(26926728-26926764)
chr4 (181-228)||(29681464-29681512)
chr4 (185-245)||(40172081-40172141)
chr4 (181-217)||(43330153-43330189)
[»] scaffold0001 (1 HSPs)
scaffold0001 (181-217)||(505017-505053)
[»] chr7 (15 HSPs)
chr7 (182-245)||(6528795-6528859)
chr7 (195-242)||(11893155-11893202)
chr7 (181-223)||(35103502-35103545)
chr7 (181-218)||(18378408-18378446)
chr7 (181-223)||(19036114-19036156)
chr7 (181-223)||(20718480-20718522)
chr7 (181-217)||(19416520-19416557)
chr7 (181-217)||(44406874-44406911)
chr7 (181-229)||(44558780-44558829)
chr7 (181-217)||(47342683-47342720)
chr7 (181-232)||(7791906-7791958)
chr7 (181-217)||(20763161-20763197)
chr7 (181-217)||(29488727-29488763)
chr7 (181-217)||(33232415-33232451)
chr7 (181-217)||(34284557-34284593)
[»] chr5 (15 HSPs)
chr5 (181-213)||(6345045-6345077)
chr5 (181-245)||(26166746-26166810)
chr5 (185-228)||(776691-776734)
chr5 (182-244)||(1358486-1358549)
chr5 (181-242)||(20114711-20114773)
chr5 (185-245)||(41344586-41344648)
chr5 (181-214)||(133586-133619)
chr5 (181-217)||(5551299-5551336)
chr5 (181-217)||(10704349-10704386)
chr5 (181-217)||(28207138-28207175)
chr5 (181-217)||(34191439-34191476)
chr5 (181-217)||(35270699-35270736)
chr5 (181-228)||(5846035-5846083)
chr5 (181-228)||(27721682-27721730)
chr5 (181-217)||(37462118-37462154)
[»] scaffold0031 (1 HSPs)
scaffold0031 (181-223)||(47253-47296)
[»] scaffold0735 (1 HSPs)
scaffold0735 (181-217)||(1534-1571)
[»] scaffold0011 (1 HSPs)
scaffold0011 (181-217)||(185269-185306)
[»] scaffold0259 (1 HSPs)
scaffold0259 (181-228)||(5419-5467)


Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 12256293 - 12256459
Alignment:
Q  15 aggaaggacataatttacaagtagacttttggtggaataccgaacccccacctcccttaatgtttttaacattagggttggactcacctaatttaggttt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  12256293 aggaaggacataatttacaagtagacttttggtggaataccgaaccccgacctcccttaacgtttttaacattagggttagactcacctaatttaggttt 12256392  T
Q  115 tgctagactgcacgtttttaattacttattattaagtttgaaagtgatatgtataatttaggcttattag 184  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||||||||    
T  12256393 tgctagactgcacgtttttaattac---ttattaagtttgaaagtgatatgtataattttggcttattag 12256459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 12256483 - 12256547
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||||||| | ||||||||||||||| |||||||| |||||||| ||||||||||||    
T  12256483 ttagctcagttggttgaataatgcataaaatatgtaaagtctggggtttaaaccctgaccactac 12256547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 17935735 - 17935797
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    ||||||||||||||| |||||||||||||||||||||| ||||  |||| |||||| ||||||    
T  17935735 ttagctcagttggtttggacaatgcataaaatatgcaaggtctagggttcaaatcccgaccac 17935797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 12582283 - 12582241
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctg 223  Q
    |||||| ||||||| |||||||||||||||||||||| |||||    
T  12582283 ttagcttagttggtaggacaatgcataaaatatgcaaggtctg 12582241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 20744144 - 20744206
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||||||| |||||||||||||| |||||||| ||||| |||| ||| || ||||||    
T  20744144 ttagctcagttggtatggacaatgcataatatatgcaaggtctggggttcaaaccccgaccac 20744206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 5937638 - 5937703
Alignment:
Q  181 ttagctcagttggttg-gacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||||||| |||||||||||||||||| || ||| | |||| |||  |||||||||||    
T  5937638 ttagctcagttggttgagacaatgcataaaatatgaaaggtccggggttcaaaatctgaccactac 5937703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 21296764 - 21296801
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  21296764 ttagctcagttggttgggacaatgcataaaatatgcaa 21296801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 26320618 - 26320581
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  26320618 ttagctcagttggtatggacaatgcataaaatatgcaa 26320581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 30579865 - 30579902
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30579865 ttagctcagttggttgggacaatgcataaaatatgcaa 30579902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 247666 - 247702
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  247666 ttagcttagttggtaggacaatgcataaaatatgcaa 247702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 12735294 - 12735234
Alignment:
Q  185 ctcagttggttgg-acaatgcataaaatatgcaaagtctgtggtttaaatcctgaccacta 244  Q
    ||||||||||||| |||||||||||||||||||| || || |||| ||| |||| ||||||    
T  12735294 ctcagttggttgggacaatgcataaaatatgcaaggtttggggttcaaaccctggccacta 12735234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 31895299 - 31895331
Alignment:
Q  185 ctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||||||||||||||||||| ||||||||||    
T  31895299 ctcagttggttggacaatgcatcaaatatgcaa 31895331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 33976251 - 33976287
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  33976251 ttagcttagttggtaggacaatgcataaaatatgcaa 33976287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 7350552 - 7350614
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||||||| |||||||||||||| |||||||||||||  |||| |||||||||||||    
T  7350552 ttagctcagttggtatggacaatgcataatatatgcaaagtctagggttcaaatcctgaccac 7350614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 21929477 - 21929509
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatat 213  Q
    |||||||||||||||||||||||||||||||||    
T  21929477 ttagctcagttggttggacaatgcataaaatat 21929509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 4122068 - 4122013
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcc 235  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||| |||||||||||    
T  4122068 ttagctcagctggtatggacaatgcataatatatgcaaggtctggggtttaaatcc 4122013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 833122 - 833073
Alignment:
Q  183 agctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaa 231  Q
    |||||||||||| |||||||||||||| |||||||| ||||| |||||||    
T  833122 agctcagttggtatggacaatgcataatatatgcaaggtctggggtttaa 833073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 23407072 - 23407011
Alignment:
Q  182 tagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||| |||| ||| |||||||||    
T  23407072 tagctcggttggtttggacaatgcataatatatgcaaggtctggggttcaaaccctgaccac 23407011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 41187512 - 41187471
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtc 221  Q
    |||||| ||||||| |||||||||||||||||||||||||||    
T  41187512 ttagcttagttggtatggacaatgcataaaatatgcaaagtc 41187471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 3708700 - 3708736
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  3708700 ttagcttagttggtaggacaatgcataaaatatgcaa 3708736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 11868716 - 11868680
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  11868716 ttagcttagttggtaggacaatgcataaaatatgcaa 11868680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 35360109 - 35360073
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  35360109 ttagcttagttggtaggacaatgcataaaatatgcaa 35360073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 41859862 - 41859906
Alignment:
Q  185 ctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||    
T  41859862 ctcagttggtatggacaatgcataaaatatgcaaggtctggggtt 41859906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 43424665 - 43424705
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaaagt 220  Q
    |||||||||||| ||||| ||||||||||||||||||||||    
T  43424665 ttagctcagttgattggaacaatgcataaaatatgcaaagt 43424705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 15873095 - 15873031
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||||||| ||| ||||| ||||||  |||||||| |||| ||||||||||||||||    
T  15873095 ttagctcagttggttgaacagtgcatcaaatatttaaagtctgaggttcaaatcctgaccactac 15873031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 21506813 - 21506764
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggttt 229  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  21506813 ttagctcagttggtatggacaatgcataaaatatgcaaggtctggggttt 21506764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 32843317 - 32843269
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    ||||||||||||||| |||||||||||||||||||||| ||||| ||||    
T  32843317 ttagctcagttggtttggacaatgcataaaatatgcaaggtctggggtt 32843269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 52575953 - 52576015
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||||||| || |||||||||||||||||||| ||||| ||||  ||||| ||||||    
T  52575953 ttagctcagttggtatgaacaatgcataaaatatgcaaggtctggggttcgaatcccgaccac 52576015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 2153551 - 2153494
Alignment:
Q  186 tcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||| ||||||||||||| |||||||| ||||| |||||||| |||| ||||    
T  2153551 tcagttggtttggacaatgcataatatatgcaaggtctggggtttaaaccctggccac 2153494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 3100227 - 3100268
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtc 221  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  3100227 ttagctcagttggtgtggacaatgcataacatatgcaaagtc 3100268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 7202971 - 7202934
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaa 217  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7202971 ttagctcagttggttggaacaatgcataaaatatgcaa 7202934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 14827531 - 14827568
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  14827531 ttagctcagttggtatggacaatgcataaaatatgcaa 14827568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 24428528 - 24428487
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtc 221  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  24428528 ttagctcagttggtatggacaatgcataatatatgcaaagtc 24428487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 25340979 - 25340942
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  25340979 ttagctcagttggtatggacaatgcataaaatatgcaa 25340942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 32629086 - 32629123
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  32629086 ttagctcagttggtatggacaatgcataaaatatgcaa 32629123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 44579642 - 44579679
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  44579642 ttagctcagttggtatggacaatgcataaaatatgcaa 44579679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 46298110 - 46298045
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    ||||||||||||||| ||| ||||||||| |||||||| ||| | |||| ||| ||||||||||||    
T  46298110 ttagctcagttggtttggataatgcataatatatgcaatgtccgaggttcaaaccctgaccactac 46298045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 916446 - 916482
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  916446 ttagcttagttggtaggacaatgcataaaatatgcaa 916482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 25441555 - 25441507
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| |||||||||||||| |||||||| ||||| ||||    
T  25441555 ttagctcagttggtatggacaatgcataatatatgcaaggtctggggtt 25441507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 216
Target Start/End: Original strand, 32836179 - 32836215
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgca 216  Q
    |||||||||||||| ||||||||||||||||||||||    
T  32836179 ttagctcagttggtatggacaatgcataaaatatgca 32836215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 53996305 - 53996353
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| |||||||||||||| |||||||| ||||| ||||    
T  53996305 ttagctcagttggtatggacaatgcataatatatgcaaggtctggggtt 53996353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 22346682 - 22346746
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccacta 244  Q
    ||||||||||||||| ||| |||||||||||||||||| ||| | |||| |||||||||||||||    
T  22346682 ttagctcagttggtttggataatgcataaaatatgcaaggtccggggttcaaatcctgaccacta 22346746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 14520950 - 14520990
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagt 220  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  14520950 ttagctcagttggtatggacaatgcataaaatatgcaaagt 14520990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 236
Target Start/End: Original strand, 25086489 - 25086545
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcct 236  Q
    |||||||||||||| ||||||||||||||||||||||| ||||  |||| |||||||    
T  25086489 ttagctcagttggtatggacaatgcataaaatatgcaaggtctagggttcaaatcct 25086545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 48100728 - 48100790
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||||||| ||||||||||||||||||||||| || || |||| ||| | |||||||    
T  48100728 ttagctcagttggtatggacaatgcataaaatatgcaaggtttggggttcaaaccttgaccac 48100790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 18166608 - 18166673
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||||| | |||||||||||| |||||||||||| | |||| ||| || |||||||||    
T  18166608 ttagctcagttggtatagacaatgcataatatatgcaaagtccggggttcaaaccccgaccactac 18166673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 23203328 - 23203365
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaa 217  Q
    |||||||||||||||||| |||||||||||||||||||    
T  23203328 ttagctcagttggttggaacaatgcataaaatatgcaa 23203365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 26803506 - 26803465
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtc 221  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  26803506 ttagctcagttggtatggacaatgcataatatatgcaaagtc 26803465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 42888581 - 42888618
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  42888581 ttagctcagttggtatggacaatgcataaaatatgcaa 42888618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 44860938 - 44860873
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||| |||| ||| || | |||||||    
T  44860938 ttagctcagttggtttggacaatgcataaaatatccaaggtctggggttcaaaccccggccactac 44860873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 47835813 - 47835850
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaa 217  Q
    |||||||||||||||||| |||||||||||||||||||    
T  47835813 ttagctcagttggttggaacaatgcataaaatatgcaa 47835850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 50040362 - 50040399
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  50040362 ttagctcagttggttgggacaatgcataaaatatgcaa 50040399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 6267485 - 6267429
Alignment:
Q  189 gttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    ||||| |||||||||||||||||||||||  | ||||||| ||| || |||||||||    
T  6267485 gttggctggacaatgcataaaatatgcaagatatgtggttcaaaccccgaccactac 6267429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 12364160 - 12364112
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| |||||  |||||||||||||||||||||| ||||    
T  12364160 ttagctcagttggtatggaccttgcataaaatatgcaaagtctggggtt 12364112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 29234029 - 29233981
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| | ||||||||||||||||||||| ||||| ||||    
T  29234029 ttagctcagttggtatagacaatgcataaaatatgcaaggtctggggtt 29233981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 40227835 - 40227883
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||| ||||    
T  40227835 ttagctcagttggtatggacaatgcataaaatatacaaggtctggggtt 40227883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 18638106 - 18638168
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||| ||| || ||||||    
T  18638106 ttagctcagttggttggaacaatgcataaaatatgcaaagtatggggttcaaaccccgaccac 18638168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 8137941 - 8138002
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgacca 241  Q
    |||||||||||||| |||||||||||||||||||||||||| || |||| ||| || |||||    
T  8137941 ttagctcagttggtatggacaatgcataaaatatgcaaagtttggggttcaaaccccgacca 8138002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 498741 - 498789
Alignment:
Q  185 ctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaa 232  Q
    |||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  498741 ctcagttggtatggacaatgcataatatatgcaaggtctgtggtttaaa 498789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 14327197 - 14327261
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||| ||||||||||||||||| ||| ||||||| ||||| || |||| |||| |||||||||||    
T  14327197 ttagttcagttggttggacaatacatcaaatatgtaaagtttgaggttcaaattctgaccactac 14327261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 32944891 - 32944833
Alignment:
Q  185 ctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||| ||||||||||||||||||||||| ||||| |||| ||| || ||||||    
T  32944891 ctcagttggtatggacaatgcataaaatatgcaaggtctgaggttcaaaccccgaccac 32944833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 2508611 - 2508648
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaa 217  Q
    |||||||||||||||||| |||||||||||||||||||    
T  2508611 ttagctcagttggttggaacaatgcataaaatatgcaa 2508648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 8461891 - 8461854
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  8461891 ttagctcagttggttgggacaatgcataaaatatgcaa 8461854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 24023470 - 24023405
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    ||||||||||| |||||| ||||||||||||||||||| ||| | |||| ||| || |||||||||    
T  24023470 ttagctcagttagttggaacaatgcataaaatatgcaaggtccggggttcaaaccccgaccactac 24023405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 37938501 - 37938562
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgacca 241  Q
    |||||||||||||| |||| ||||||||| |||||||||||| | |||| |||||| |||||    
T  37938501 ttagctcagttggtatggataatgcataatatatgcaaagtccgaggttcaaatcccgacca 37938562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 20665417 - 20665381
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  20665417 ttagcttagttggtaggacaatgcataaaatatgcaa 20665381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 22504336 - 22504308
Alignment:
Q  189 gttggttggacaatgcataaaatatgcaa 217  Q
    |||||||||||||||||||||||||||||    
T  22504336 gttggttggacaatgcataaaatatgcaa 22504308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 217
Target Start/End: Complemental strand, 24838224 - 24838188
Alignment:
Q  182 tagctcagttggtt-ggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| ||||||||||||||||||||||    
T  24838224 tagctcagttggttaggacaatgcataaaatatgcaa 24838188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 30550780 - 30550744
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  30550780 ttagcttagttggtaggacaatgcataaaatatgcaa 30550744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 40399991 - 40400027
Alignment:
Q  185 ctcagttggttgg-acaatgcataaaatatgcaaagt 220  Q
    ||||||||||||| |||||||||||||||||||||||    
T  40399991 ctcagttggttgggacaatgcataaaatatgcaaagt 40400027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 44215529 - 44215493
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  44215529 ttagcttagttggtaggacaatgcataaaatatgcaa 44215493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 36061409 - 36061450
Alignment:
Q  181 ttagctcagttggttg-gacaatgcataaaatatgcaaagtc 221  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  36061409 ttagctcagttggttgagacaatgcataaaatatgcaaagtc 36061450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 15849240 - 15849288
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| |||| |||||||||||||||||||||||| ||||    
T  15849240 ttagctcagttggtatggataatgcataaaatatgcaaagtctgaggtt 15849288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 16431622 - 16431670
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  16431622 ttagctcagttggtatggacaatgcataaaatatgcaaggtctggggtt 16431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 32180836 - 32180884
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| | ||||||||||||||||||||||||||| ||||    
T  32180836 ttagctcagttggtatagacaatgcataaaatatgcaaagtctggggtt 32180884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 48226553 - 48226498
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcc 235  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||| |||| ||||||    
T  48226553 ttagctcaattggtatggacaatgcataaaatatgcaaggtctggggttcaaatcc 48226498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 52132356 - 52132309
Alignment:
Q  182 tagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||    
T  52132356 tagctcagttggtttggacaatgcataatatatgcaaggtctgtggtt 52132309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 9946433 - 9946495
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||||||||| ||||||||||||||||||||||| ||| | |||| ||| || ||||||    
T  9946433 ttagctcagttggtatggacaatgcataaaatatgcaaggtccggggttcaaaccccgaccac 9946495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 214
Target Start/End: Original strand, 37253844 - 37253878
Alignment:
Q  180 attagctcagttggttggacaatgcataaaatatg 214  Q
    ||||||||||||||||||||||||||| |||||||    
T  37253844 attagctcagttggttggacaatgcatcaaatatg 37253878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 10497265 - 10497306
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtc 221  Q
    |||||||| ||||| |||||||||||||||||||||||||||    
T  10497265 ttagctcaattggtatggacaatgcataaaatatgcaaagtc 10497306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 28031818 - 28031855
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaa 217  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28031818 ttagctcagttggttggaacaatgcataaaatatgcaa 28031855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 35576558 - 35576615
Alignment:
Q  185 ctcagttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    |||||||| | |||||||| ||||||||||||| ||| | |||||||| |||||||||    
T  35576558 ctcagttgttaggacaatgtataaaatatgcaaggtccgaggtttaaaccctgaccac 35576615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 10261823 - 10261787
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  10261823 ttagcttagttggtaggacaatgcataaaatatgcaa 10261787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 21562632 - 21562668
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  21562632 ttagcttagttggtaggacaatgcataaaatatgcaa 21562668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 24079894 - 24079858
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  24079894 ttagcttagttggtaggacaatgcataaaatatgcaa 24079858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 26926764 - 26926728
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  26926764 ttagcttagttggtaggacaatgcataaaatatgcaa 26926728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 29681512 - 29681464
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||| ||||||||| ||||||||||||||||||||||| ||||| ||||    
T  29681512 ttagttcagttggtatggacaatgcataaaatatgcaatgtctgaggtt 29681464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 40172081 - 40172141
Alignment:
Q  185 ctcagttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||||| ||||||| ||||||| || |||  ||||||||| ||| ||||||||    
T  40172081 ctcagttggttggaaaatgcatcaaatatgtaaggtccatggtttaaaccctaaccactac 40172141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 43330153 - 43330189
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  43330153 ttagcttagttggtaggacaatgcataaaatatgcaa 43330189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 505017 - 505053
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| ||||||||||||||||||||||    
T  505017 ttagctcagttggtaggacaatgcataaaatatgcaa 505053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 6528859 - 6528795
Alignment:
Q  182 tagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    ||||||||||||| ||||||||||||||||||||||||||     ||||||||||||||| ||||    
T  6528859 tagctcagttggtatggacaatgcataaaatatgcaaagttcagagtttaaatcctgacctctac 6528795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 11893155 - 11893202
Alignment:
Q  195 tggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    ||||||||||||||||||||||| ||||  |||||||| |||||||||    
T  11893155 tggacaatgcataaaatatgcaaggtctacggtttaaaccctgaccac 11893202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 35103502 - 35103545
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaaagtctg 223  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  35103502 ttagctcagttggttgggacaatgcataaaatatgcaaggtctg 35103545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 18378408 - 18378446
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaaa 218  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  18378408 ttagctcagttggttgggacaatgcataaaatatgcaaa 18378446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 19036156 - 19036114
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctg 223  Q
    |||||| ||||||| |||||||||||||||||||||| |||||    
T  19036156 ttagcttagttggtaggacaatgcataaaatatgcaaggtctg 19036114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 20718480 - 20718522
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctg 223  Q
    |||||| ||||||| |||||||||||||||||||||| |||||    
T  20718480 ttagcttagttggtaggacaatgcataaaatatgcaaggtctg 20718522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 19416520 - 19416557
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  19416520 ttagctcagttggtatggacaatgcataaaatatgcaa 19416557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 44406911 - 44406874
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  44406911 ttagctcagttggttgggacaatgcataaaatatgcaa 44406874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 44558829 - 44558780
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggttt 229  Q
    |||||||||||||| |||||||||||||| |||||||| ||||| |||||    
T  44558829 ttagctcagttggtatggacaatgcataatatatgcaaggtctgaggttt 44558780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 47342683 - 47342720
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  47342683 ttagctcagttggtatggacaatgcataaaatatgcaa 47342720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 7791906 - 7791958
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaa 232  Q
    ||||||||||||||| ||||||||| ||| |||||||| ||||| ||||||||    
T  7791906 ttagctcagttggtttggacaatgcgtaatatatgcaaggtctgaggtttaaa 7791958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 20763161 - 20763197
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  20763161 ttagcttagttggtaggacaatgcataaaatatgcaa 20763197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 29488727 - 29488763
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  29488727 ttagcttagttggtaggacaatgcataaaatatgcaa 29488763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 33232451 - 33232415
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  33232451 ttagcttagttggtaggacaatgcataaaatatgcaa 33232415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 34284593 - 34284557
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  34284593 ttagcttagttggtaggacaatgcataaaatatgcaa 34284557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 6345045 - 6345077
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatat 213  Q
    |||||||||||||||||||||||||||||||||    
T  6345045 ttagctcagttggttggacaatgcataaaatat 6345077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 26166746 - 26166810
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||||| ||||||||||| |||||||||| |||   |||| ||| ||||||||||||    
T  26166746 ttagctcagttggtcggacaatgcatcaaatatgcaaggtccagggttcaaaccctgaccactac 26166810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 776691 - 776734
Alignment:
Q  185 ctcagttggttggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||    
T  776691 ctcagttgattggacaatgcataaaatatgcaaggtctgaggtt 776734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 1358549 - 1358486
Alignment:
Q  182 tagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccacta 244  Q
    |||||||||||||| ||||||||||||||||||| || ||||  |||| ||||||||| |||||    
T  1358549 tagctcagttggttaggacaatgcataaaatatgtaaggtctagggttcaaatcctgatcacta 1358486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 20114711 - 20114773
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtttaaatcctgaccac 242  Q
    ||||||||||||||  |||||||||||||||||| |||||| || |||| |||||| ||||||    
T  20114711 ttagctcagttggtaaggacaatgcataaaatatacaaagtttgaggttcaaatcccgaccac 20114773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 41344586 - 41344648
Alignment:
Q  185 ctcagttggttg-gacaatgcataaaatatgcaaa-gtctgtggtttaaatcctgaccactac 245  Q
    |||||||||||| |||||||||||||||||||||| ||| | |||| ||| ||||||||||||    
T  41344586 ctcagttggttgagacaatgcataaaatatgcaaaggtccgaggttcaaaccctgaccactac 41344648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 133619 - 133586
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatg 214  Q
    ||||||||||||||||||| ||||||||||||||    
T  133619 ttagctcagttggttggacgatgcataaaatatg 133586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 5551336 - 5551299
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaa 217  Q
    |||||||||||||||||| |||||||||||||||||||    
T  5551336 ttagctcagttggttggaacaatgcataaaatatgcaa 5551299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 10704386 - 10704349
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10704386 ttagctcagttggtatggacaatgcataaaatatgcaa 10704349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 28207138 - 28207175
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  28207138 ttagctcagttggtatggacaatgcataaaatatgcaa 28207175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 34191439 - 34191476
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  34191439 ttagctcagttggttgggacaatgcataaaatatgcaa 34191476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 35270736 - 35270699
Alignment:
Q  181 ttagctcagttggttgg-acaatgcataaaatatgcaa 217  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  35270736 ttagctcagttggttgggacaatgcataaaatatgcaa 35270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 5846035 - 5846083
Alignment:
Q  181 ttagctcagttggtt-ggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    ||||||||||||||  ||||||||||||| |||||||||||||| ||||    
T  5846035 ttagctcagttggtaaggacaatgcataatatatgcaaagtctggggtt 5846083  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 27721730 - 27721682
Alignment:
Q  181 ttagctcagttggttgga-caatgcataaaatatgcaaagtctgtggtt 228  Q
    |||||||||||||| ||| |||||||||| |||||||||||||| ||||    
T  27721730 ttagctcagttggtaggaacaatgcataatatatgcaaagtctggggtt 27721682  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 37462118 - 37462154
Alignment:
Q  181 ttagctcagttggttggacaatgcataaaatatgcaa 217  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  37462118 ttagcttagttggtaggacaatgcataaaatatgcaa 37462154  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 47296 - 47253
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctg 223  Q
    |||||||||||||| ||||||||||||||||||||||| |||||    
T  47296 ttagctcagttggtatggacaatgcataaaatatgcaaggtctg 47253  T

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Target: scaffold0735 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 1534 - 1571
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  1534 ttagctcagttggtatggacaatgcataaaatatgcaa 1571  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 217
Target Start/End: Original strand, 185269 - 185306
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaa 217  Q
    |||||||||||||| |||||||||||||||||||||||    
T  185269 ttagctcagttggtatggacaatgcataaaatatgcaa 185306  T

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Target: scaffold0259 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 5419 - 5467
Alignment:
Q  181 ttagctcagttggt-tggacaatgcataaaatatgcaaagtctgtggtt 228  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||| ||||    
T  5419 ttagctcggttggtatggacaatgcataaaatatgcaaggtctggggtt 5467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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