View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_129 (Length: 237)
Name: NF3892_high_129
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_129 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 63 - 237
Target Start/End: Complemental strand, 54294981 - 54294807
Alignment:
| Q |
63 |
caaatgattgaggagcttggtcataaagtgatgtttcctcaatgtcatcggatcataatttacaaggaaagtatcagtcctattggaggaataagttgtt |
162 |
Q |
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| T |
54294981 |
caaatgattgaggagcttggtcataaagtgatgtttcctcaatgtcatcggatcataatttacaaggaaagtatcagtcctattggaggaataagttgtt |
54294882 |
T |
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| Q |
163 |
aattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgact |
237 |
Q |
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| T |
54294881 |
aattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagtgact |
54294807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54300119 - 54300054
Alignment:
| Q |
1 |
ttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa |
66 |
Q |
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| T |
54300119 |
ttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa |
54300054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54306272 - 54306207
Alignment:
| Q |
1 |
ttggtacaacaattagattgatttgaacagatatagccctattaaactataaataaaaagatcaaa |
66 |
Q |
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| T |
54306272 |
ttggtacaacaattagattgatttgaacaaatatagccctataaaactataaattaaaagatcaaa |
54306207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 54287473 - 54287439
Alignment:
| Q |
33 |
atagccctattaaactataaataaaaagatcaaat |
67 |
Q |
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| T |
54287473 |
atagccctattaaactaaaaataaaaagatcaaat |
54287439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 42446592 - 42446680
Alignment:
| Q |
144 |
attggaggaataagttgttaattgttattcttgtttacacaaagaattatatgattgtggttatttggggtattaccttgtagacaaagt |
233 |
Q |
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| T |
42446592 |
attggaggaataattaattaattgtttttcttgttttcaccaagaggtatatgattgtggtt-cttgagatattaccttgtatacaaagt |
42446680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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