View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_high_138 (Length: 229)
Name: NF3892_high_138
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_138 |
 | |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 3417558 - 3417767
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| |
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|
| T |
3417558 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccaccctgcggtagggggatttatgacacattgtggggggaactcatttgttgagg |
3417657 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3417658 |
ctgttggtgcaggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagtccgaggaattggagtggaagt |
3417757 |
T |
|
| Q |
201 |
aggtgcaaca |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
3417758 |
aggtgcaaca |
3417767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 12540833 - 12540624
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| | ||||||| |
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|
| T |
12540833 |
ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcggtggggggatttatgacacattgtgggggaaactcaattgtagagg |
12540734 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||| || |||||||||||||| ||||| |
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|
| T |
12540733 |
ctgttggtgcgggagttccaatgataacgtggccgtgtcatggagatcacttattcaacgagaaactaataacacaggtccgaggaattggagtagaagt |
12540634 |
T |
|
| Q |
201 |
aggtgcaaca |
210 |
Q |
| |
|
|||||||||| |
|
|
| T |
12540633 |
aggtgcaaca |
12540624 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 205
Target Start/End: Complemental strand, 28385470 - 28385278
Alignment:
| Q |
13 |
aggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgg |
112 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| | |||||||| ||||||||| |||||||||| || ||||||||| | |||||||||||| | |||| |
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|
| T |
28385470 |
aggggttgggccccacaagttctgatattgagcaaccctgcggtggggggatttctgacacattgcggagggaactcaattgtagaggctgttggcgcgg |
28385371 |
T |
|
| Q |
113 |
gagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagtaggtg |
205 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| || |||||||||| | |||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
28385370 |
gagttccaatgataacgtggccttgtcatgcagatcacttcagcaatgagaaattgataacaacagtccgaagaattggagtggaagtaggtg |
28385278 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13448511 - 13448302
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| || |||||||||||||| ||||| |||||||||||| |||||||| |
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|
| T |
13448511 |
ggtttgatcattaggggttgggccccacaggttaagatattgagccaccctgcagtggggggatttatgacgcattgcggggggaactcaaccgtagagg |
13448412 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||| | |||||||||||||| ||||| |
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|
| T |
13448411 |
ctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataacacaattccgaggaattggagttgaagt |
13448312 |
T |
|
| Q |
201 |
aggtgcaaca |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
13448311 |
cggtgcaaca |
13448302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 13440348 - 13440140
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
||||||||| ||| ||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| | |||||| |
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|
| T |
13440348 |
ggtttgatcattaagggttgggccccacaagttaagatattgagccaccctgcggtggggggatttatgacgcattgcggggggaactcaattgtagagt |
13440249 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
13440248 |
ctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaacgagaaactggtaacacaatttcgaggaattggagtggaagt |
13440149 |
T |
|
| Q |
201 |
aggtgcaac |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
13440148 |
cggtgcaac |
13440140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 13454982 - 13454773
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||||||||| || ||||| || |||||||||||||| ||||| |||||||||||| ||||||||| |
|
|
| T |
13454982 |
ggtttgatcattaggggttgggccccacaagttaagatattgagtcaccctgcagtggggggatttatgacgcattgcggggggaactcaatcgtagagg |
13454883 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | |||||||||||||| | ||| ||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
13454882 |
ctgttagcatgggagttccaatgataacgtggccagtccatggagatcaattctacaacgagaaactaataacacaagttcgaggaattggaattgaagt |
13454783 |
T |
|
| Q |
201 |
aggtgcaaca |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
13454782 |
cggtgcaaca |
13454773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 48958292 - 48958083
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
||||||||| ||||||| ||||||||||| ||| ||| ||||||| ||| || || | ||||||||||||||| ||| ||||||| || |||| |
|
|
| T |
48958292 |
ggtttgatcattagggggtgggccccacaagttttgattctgagccacattgccgtgggtgcatttatgacacattgcgggtggaactccactgtggagg |
48958193 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||| |||||||| ||||| | ||||||||| | ||||| | || ||||||||||| ||||| || |
|
|
| T |
48958192 |
ctgttagcgcgggggttccaatgatcacgtggccggtgcatggagaacaattctacaatgagaagttgataactaatgtgcgaggaattggggtggaggt |
48958093 |
T |
|
| Q |
201 |
aggtgcaaca |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
48958092 |
tggtgcaaca |
48958083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 48965477 - 48965268
Alignment:
| Q |
1 |
ggtttgatcgttaggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagagg |
100 |
Q |
| |
|
|||||||| ||||||||||||| || ||||||| ||| ||||||| || || || || | |||||||| |||||||| ||||||| || |||| |
|
|
| T |
48965477 |
ggtttgattattaggggttgggctccgcaggttctgattctgagccaccccgctgtgggtgcctttatgactcattgtggttggaactccacagtggagg |
48965378 |
T |
|
| Q |
101 |
ctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagt |
200 |
Q |
| |
|
||||| ||||||| ||||| ||||| || ||||| |||||||| ||||| | ||| || ||||| |||||| |||| ||||| |||||||||||||| |
|
|
| T |
48965377 |
ctgttggtgcgggggttccgatgattacatggccttcacatggagaacaattctacaacgaaaaactgataacagaagtgcgagggattggagtggaagt |
48965278 |
T |
|
| Q |
201 |
aggtgcaaca |
210 |
Q |
| |
|
||||||||| |
|
|
| T |
48965277 |
tggtgcaaca |
48965268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 48912438 - 48912584
Alignment:
| Q |
63 |
atttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgag |
162 |
Q |
| |
|
||||||||||||||||||| |||| || || ||||| |||||||| || ||||||||||| ||||||||| |||||||| || || | ||||||| |
|
|
| T |
48912438 |
atttatgacacattgtgggtggaattccactgttgaggcagttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgag |
48912537 |
T |
|
| Q |
163 |
aaactaataacacaagttcgaggaattggagtggaagtaggtgcaac |
209 |
Q |
| |
|
|| | |||||||| || | || ||||| ||||| || |||||||| |
|
|
| T |
48912538 |
aagttgataacacaggtgcatgggattggggtggaggtcggtgcaac |
48912584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 12483510 - 12483707
Alignment:
| Q |
13 |
aggggttgggccccacaggttcagatattgagccatcctgcggtagggggatttatgacacattgtggggggaactcattcgtagaggctgttagtgcgg |
112 |
Q |
| |
|
||||| ||||| |||||||| | ||| |||||||| ||||| || || | ||||||||| || ||||| |||| || | || || || |||||||| | |
|
|
| T |
12483510 |
agggggtgggcaccacaggtactgattttgagccaccctgcagtgggtgcatttatgactcactgtggatggaattctgttgtggaagcggttagtgcag |
12483609 |
T |
|
| Q |
113 |
gagttccaatgataacgtggccgggtcatggagatcaattgttcaatgagaaactaataacacaagttcgaggaattggagtggaagtaggtgcaaca |
210 |
Q |
| |
|
| |||||||||| |||||||||| ||| || || || || | |||||||||||| ||||| | || ||||| ||||| |||||||| ||||||||| |
|
|
| T |
12483610 |
ggattccaatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgtggaagtcggtgcaaca |
12483707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 207
Target Start/End: Original strand, 10587 - 10730
Alignment:
| Q |
64 |
tttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgaga |
163 |
Q |
| |
|
|||||||||||||||||| |||| || ||| ||||| |||||||| || ||||||||||| |||||||| |||||||| ||||| | |||||||| |
|
|
| T |
10587 |
tttatgacacattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatgaga |
10686 |
T |
|
| Q |
164 |
aactaataacacaagttcgaggaattggagtggaagtaggtgca |
207 |
Q |
| |
|
| | ||||| ||||| || || ||||| | |||||| |||||| |
|
|
| T |
10687 |
agttgataacgcaagtgcgggggattgggggggaagtgggtgca |
10730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 6605 - 6737
Alignment:
| Q |
64 |
tttatgacacattgtggggggaactcattcgtagaggctgttagtgcgggagttccaatgataacgtggccgggtcatggagatcaattgttcaatgaga |
163 |
Q |
| |
|
|||||||| ||||||||| |||| || || |||||||||||||| || ||||| ||||| |||||||||| |||||||| ||||| | |||||| | |
|
|
| T |
6605 |
tttatgacgcattgtgggtggaattccactgttgaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaa |
6704 |
T |
|
| Q |
164 |
aactaataacacaagttcgaggaattggagtgg |
196 |
Q |
| |
|
| | |||||||| || ||| ||||||| |||| |
|
|
| T |
6705 |
agttgataacacaggtgcgacgaattggggtgg |
6737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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