View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_142 (Length: 221)
Name: NF3892_high_142
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_142 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 54182248 - 54182440
Alignment:
| Q |
15 |
cataggaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaaccccaacatccgcaacga |
114 |
Q |
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| T |
54182248 |
cataagaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaacctcaacatccgcaacga |
54182347 |
T |
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| Q |
115 |
ggtcaacaacttaaatattaagccttaccttatgatgtcggctacttcatggccgtagtcttgctcatttactccaacaacataagttggaat |
207 |
Q |
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| T |
54182348 |
ggtcaacaacttaaatattaagccttaccttatgatgtcggctacttcatggccgtagtcttgctcatttactccaacaacataagttggaat |
54182440 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 207
Target Start/End: Original strand, 19748770 - 19748963
Alignment:
| Q |
15 |
cataggaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaaccccaacatccgcaacga |
114 |
Q |
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| T |
19748770 |
cataagaatgaatatgaataatcaatcaaaacacaacactatcttgcattgacattctcagttgtgatacccttgttttcaacctcaacatttgcaacga |
19748869 |
T |
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| Q |
115 |
ggtcaacaacttaaatatt-aagccttaccttatgatgtcggctacttcatggccgtagtcttgctcatttactccaacaacataagttggaat |
207 |
Q |
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| T |
19748870 |
ggtcaacaacttaaatattaaaaccttaccttatgatgttggctacttcatggccgtagtcttgctcatttactacaacaacataagttggaat |
19748963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 5076573 - 5076411
Alignment:
| Q |
24 |
gaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaaccccaacatccgcaacgaggtcaacaa |
123 |
Q |
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||||||||||| |||||||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||| |||||| | ||||||||||||||| |
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| T |
5076573 |
gaatatgaata-tcaatcaaaacacatcattatcttgcattgacattctcagttgtgatacccttgttctcaacctcaacattcacaacgaggtcaacaa |
5076475 |
T |
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| Q |
124 |
cttaaatatt-aagccttaccttatgatgtcggctacttcatggccgtagtcttgctcatttac |
186 |
Q |
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| T |
5076474 |
cttaaatattaaagccttaccttatgatgtcggctacttcatggccgtagtcttgctcatttac |
5076411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 7412643 - 7412814
Alignment:
| Q |
15 |
cataggaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaaccccaacatccgcaacga |
114 |
Q |
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| T |
7412643 |
cataagaatgaatatgaata-tcaatcaaaacacagcactatcttgcattgacattctcatttgtgatacccttgctctcaacctcaacatccgcaacga |
7412741 |
T |
|
| Q |
115 |
ggtcaacaacttaaatatt-aagccttaccttatgatgtcggctacttcatggccgtagtcttgctcatttac |
186 |
Q |
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||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7412742 |
ggtcaacaacttaaatattaaagcctaaccttatgatgtcagctacttcatggccgtagtcttgctcatttac |
7412814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 15 - 176
Target Start/End: Original strand, 6224813 - 6224975
Alignment:
| Q |
15 |
cataggaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaaccccaacatccgcaacga |
114 |
Q |
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|||||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||| || ||||||| |||||||||||| |||||| ||||| || |
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| T |
6224813 |
cataggaatgaatatgaataatcaataaaaacacgacactatcttgcattgacattctcaactatgataccgttgttctcaacctcaacattcgcaatga |
6224912 |
T |
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| Q |
115 |
ggtcaacaacttaaat-attaagccttaccttatgatgtcggctacttcatggccgtagtctt |
176 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6224913 |
ggtcaacaacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtctt |
6224975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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