View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_143 (Length: 218)
Name: NF3892_high_143
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_143 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 202
Target Start/End: Original strand, 39520571 - 39520752
Alignment:
| Q |
21 |
atcctcttcacattgaaattatcagttgcaaattgaagatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatg |
120 |
Q |
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| T |
39520571 |
atcctctttgcatcgaaattatccgttgcaaattgaagatcaagcaaagggattttcaatccaaggtttatgttaggtaaaggtgagccttgaattgttg |
39520670 |
T |
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| Q |
121 |
ttgcatcagttaatctgccgtgagaactccctcctctggcagctggaatgggcaaccatttggaattctcaacaggcctttg |
202 |
Q |
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| T |
39520671 |
ttgcatcagttaatctgctgtgagaactccctcctctggcagctggaatgggcaaccattcggaattctcaacaggcctttg |
39520752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 39510310 - 39510494
Alignment:
| Q |
18 |
attatcctcttcacattgaaattatcagttgcaaattgaagatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatgg |
117 |
Q |
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| T |
39510310 |
attatcctctttgcatcaaagttatccgttgcgaattgaagatcaagcaaggggattttcaatccgaggtttatgttaggtaaaggggagccttgaattg |
39510409 |
T |
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| Q |
118 |
atgttgcatcagttaatctgccgtgagaactccctcctctggcagctggaatgggcaaccatttggaattctcaacaggcctttg |
202 |
Q |
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| T |
39510410 |
ctgttgcatcagttaatctgctgtgagaactccctcctctggcagctggaattggcaaccattcggaattttcaacaggcctttg |
39510494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 39524092 - 39524237
Alignment:
| Q |
57 |
agatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatgttgcatcagttaatctgccgtgagaactccctcctc |
156 |
Q |
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| T |
39524092 |
agatcaagcaaagggattttcaatccaaggtttatgttaggtaaaggcgagccttgaattgttgttgcatcagttaatctgctgtgagaacttcctcctc |
39524191 |
T |
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| Q |
157 |
tggcagctggaatgggcaaccatttggaattctcaacaggcctttg |
202 |
Q |
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| T |
39524192 |
tggcagctggaataggcaaccattcggacttctcaacaggcctttg |
39524237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 202
Target Start/End: Original strand, 39575242 - 39575391
Alignment:
| Q |
53 |
ttgaagatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttgaatggatgttgcatcagttaatctgccgtgagaactccct |
152 |
Q |
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| T |
39575242 |
ttgaaggtcaagcaaggagattttcatgccaaggtttatgttaggtaaaggtgagccttgagttgtttttccataagttaatttgctatgagaaatccct |
39575341 |
T |
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| Q |
153 |
cctctggcagctggaatgggcaaccatttggaattctcaacaggcctttg |
202 |
Q |
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| T |
39575342 |
cctgcagcagttggaatcggcaacaaatcgaaactctcaacaggcctttg |
39575391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 39579761 - 39579838
Alignment:
| Q |
36 |
aaattatcagttgcaaattgaagatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttga |
113 |
Q |
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| T |
39579761 |
aaattctctgttgcgaattgaagatcaagcaaggagattttcaggccaaggtttatgttaggtaaaggcgagccttga |
39579838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 39543407 - 39543467
Alignment:
| Q |
53 |
ttgaagatcaagcaaggggattttcaatccaagatttatgttaggtaaaggtgagccttga |
113 |
Q |
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| T |
39543407 |
ttgaaggtcaagcaaggagattttcatgccaaggtttatgttaggtaaaggtgagccttga |
39543467 |
T |
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