View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_high_145 (Length: 214)
Name: NF3892_high_145
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_145 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 28385231 - 28385051
Alignment:
| Q |
13 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28385231 |
gagcagagataacatagagaaggctatgaggaaattgatggacggtggcgatgaagctgaaaatatgagacaacgtgctcgagagttaggagagaaggct |
28385132 |
T |
|
| Q |
113 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacagc |
193 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28385131 |
acacgagctgttaaagaaggtggttcctcttataataatttgttagctttaatcgacgaacttaaaagattgagagacagc |
28385051 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 12540580 - 12540405
Alignment:
| Q |
15 |
gcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctac |
114 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||||| |||||| | ||||||||||||| |
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| T |
12540580 |
gcagagatggcatagagaaggctatgaggagattgatggatggtggttatgaagctgaaaatatgagactacgtgcacgagagattggagagaaggctag |
12540481 |
T |
|
| Q |
115 |
acgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac |
190 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| |
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|
| T |
12540480 |
acgagctgttcaagaaggtggttcctctcataataatttgttatctttgatcgacgaaattaaaagatttagagac |
12540405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 3417809 - 3417986
Alignment:
| Q |
13 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
112 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||||||| || | ||||| |||||| |||||||| ||||||||||||| | |||||||||||| |
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| T |
3417809 |
gagcagagatgacatagagaaggcaatgaggagattgatggacagtagtgatgaggctgaaggtatgagactacgtgctcgagagcttggagagaaggct |
3417908 |
T |
|
| Q |
113 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac |
190 |
Q |
| |
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| ||||||| || |||||||||||||||| ||| ||||||||||| |||| |||||||||||||||| ||||||||| |
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| T |
3417909 |
aaacgagctattcaagaaggtggttcctcacatcataatttgttaactttgatcgacgaacttaaaaagttgagagac |
3417986 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 13448260 - 13448083
Alignment:
| Q |
13 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
112 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||| ||||| || ||| |
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| T |
13448260 |
gagcagagatagcatagagaaggctgtaaggagattgatggacggtggtgatgaagctgaaaatatcaggctacgtgctcgagagtttggagaaaaagct |
13448161 |
T |
|
| Q |
113 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac |
190 |
Q |
| |
|
| || |||| || |||||||||| || ||| ||||||||||||| ||||| || |||||||||||||||| ||||||| |
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|
| T |
13448160 |
atacaagctattcaagaaggtggctcgtcttataataatttgttggctttgattgacgaacttaaaagatcgagagac |
13448083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 13440097 - 13439920
Alignment:
| Q |
13 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
112 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||| ||| ||||||||| || ||||||| | || ||||| |||||| ||||| |||||| |
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|
| T |
13440097 |
gagcagggataacatagagaaggctgtgaggagattgatggagaatggtgatgaagctaaaaatatgaggctacttgctcaagagtttggagaaaaggct |
13439998 |
T |
|
| Q |
113 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac |
190 |
Q |
| |
|
|||| |||| || |||||||||| || ||| ||||||||||||| |||||||| || ||||||||||||||||||||| |
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|
| T |
13439997 |
acacaagctattcaagaaggtggctcgtcttataataatttgttggctttaattgaagaacttaaaagattgagagac |
13439920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 13454731 - 13454557
Alignment:
| Q |
13 |
gagcagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggct |
112 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||| || |||| || ||||||||||||||| ||||| |||||| |
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|
| T |
13454731 |
gagcaaagatagcatagagaaggctgtgaggagattgatgggcggtggtgatgaagctaaaaatatcagggtacgtgctcgagagtttggagaaaaggct |
13454632 |
T |
|
| Q |
113 |
acacgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgaga |
187 |
Q |
| |
|
|||| |||| || || ||||||| || ||| ||||||||||||| ||||| || || |||||||||||||||||| |
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|
| T |
13454631 |
acacaagctattcaaaaaggtggctcatcttataataatttgttggctttgattgatgaacttaaaagattgaga |
13454557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 48961182 - 48961009
Alignment:
| Q |
19 |
agataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacga |
118 |
Q |
| |
|
|||||| ||||||||||| |||| | ||| ||||||||||| |||||||| ||| |||| |||| |||||||||||||| || || ||||||| | || |
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|
| T |
48961182 |
agataatatagagaaggcagtgagaaaattaatggacggtggtgatgaagccgaagatataagacggcgtgctcgagagtttggggataaggctatatga |
48961083 |
T |
|
| Q |
119 |
gctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagacag |
192 |
Q |
| |
|
|||||| ||| ||| || || ||||||||||||||||| |||||||| || || |||||||||||||||||||| |
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|
| T |
48961082 |
gctgttcaagtaggcggctcatctcataataatttgttggctttaattgatgatcttaaaagattgagagacag |
48961009 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 48967352 - 48967177
Alignment:
| Q |
16 |
cagagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctaca |
115 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| || |||||||||||| | || ||||||||||||||||| || ||||| ||||||||| |
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|
| T |
48967352 |
cagagataacatagagaaagctataagaagattgatggacaatgacgatgaagctgagaagatcagacaacgtgctcgagactttggagaaaaggctaca |
48967253 |
T |
|
| Q |
116 |
cgagctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagaca |
191 |
Q |
| |
|
||||| || |||||||||| | ||| |||||||||| | ||||| || || || ||||||||| ||||||||| |
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|
| T |
48967252 |
cgagcacttcaagaaggtggcttgtcttataataatttacttgctttgattgatgatcttaaaagaatgagagaca |
48967177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 156
Target Start/End: Complemental strand, 48958028 - 48957898
Alignment:
| Q |
26 |
atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta |
125 |
Q |
| |
|
||||| |||||| ||| |||||||||||||||||| ||||||||||| | || | ||| ||||||| |||||| ||||| |||||||||||||||||| |
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|
| T |
48958028 |
atagaaaaggctgtgaagagattgatggacggtggtgatgaagctgaggaaatcaaacagcgtgctcaagagttcggagaaaaggctacacgagctgttc |
48957929 |
T |
|
| Q |
126 |
aagaaggtggttcctctcataataatttgtt |
156 |
Q |
| |
|
|||||||||| || |||||||| |||||||| |
|
|
| T |
48957928 |
aagaaggtggatcatctcataacaatttgtt |
48957898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 48965219 - 48965050
Alignment:
| Q |
20 |
gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag |
119 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| |||| ||||||||||| | || ||| ||||||| |||||| ||||| ||||||| ||||| |
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|
| T |
48965219 |
gatagcatagagaaggctgtgaggagattgatggacagtggtgatgaagctgagaaaattagaagtcgtgctcaagagtttggagaaaaggctagacgag |
48965120 |
T |
|
| Q |
120 |
ctgttaaagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagaga |
189 |
Q |
| |
|
| || |||||||||| || |||||||| ||||||||||| || || || || || |||||||||||||| |
|
|
| T |
48965119 |
ccattcaagaaggtggctcgtctcataagaatttgttagccttgattgatgatctcaaaagattgagaga |
48965050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 48912634 - 48912759
Alignment:
| Q |
20 |
gataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgag |
119 |
Q |
| |
|
||||| || ||||||| | ||| | ||||||||||| |||| ||||||||||| | || ||||||| |||||||||||| || ||||| |||| || | |
|
|
| T |
48912634 |
gataatattgagaaggttgtgaagcgattgatggacagtggtgatgaagctgagaaaatcagacaacatgctcgagagtttggggagaaagctaaacatg |
48912733 |
T |
|
| Q |
120 |
ctgttaaagaaggtggttcctctcat |
145 |
Q |
| |
|
| |||||||||||||||| |||||| |
|
|
| T |
48912734 |
caattaaagaaggtggttcatctcat |
48912759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 12641776 - 12641940
Alignment:
| Q |
26 |
atagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacacgagctgtta |
125 |
Q |
| |
|
|||||||| ||| |||||||||||||||||| ||| ||||||||| | | || ||||||||||||| |||||| || | |||||||||| |||||| |
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|
| T |
12641776 |
atagagaaagctgtgaggagattgatggacgatggtgatgaagctaaggaaatcagacaacgtgctcaagagtttgggaaaaaggctacacatgctgttg |
12641875 |
T |
|
| Q |
126 |
aagaaggtggttcctctcataataatttgttagctttaatcgacgaacttaaaagattgagagac |
190 |
Q |
| |
|
||||||| || || |||||||| |||||||| ||||| || |||| |||||||||| ||||||| |
|
|
| T |
12641876 |
aagaaggcgggtcgtctcataacaatttgttggctttgattaacgatcttaaaagatcgagagac |
12641940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 12590455 - 12590595
Alignment:
| Q |
17 |
agagataacatagagaaggctatgaggagattgatggacggtggcgatgaagctgaatatatgagacaacgtgctcgagagttaggagagaaggctacac |
116 |
Q |
| |
|
||||||| |||| |||| ||| |||| ||||||||||| |||||| ||||||||| | || |||| |||| || ||||||||| || || |||| || |
|
|
| T |
12590455 |
agagatagcataaagaatgctgtgagaagattgatggatggtggcattgaagctgaggaaatcagacgacgtagtcaagagttaggggaaaaagctagac |
12590554 |
T |
|
| Q |
117 |
gagctgttaaagaaggtggttcctctcataataatttgtta |
157 |
Q |
| |
|
||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
12590555 |
tagctgttcaacaaggtggctcctctaataataatttgtta |
12590595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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