View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_15 (Length: 511)
Name: NF3892_high_15
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Original strand, 47662968 - 47663450
Alignment:
| Q |
19 |
agctaactgtttccatatggcagccactacctcttccacctgcagtggtttcttcaacttccgatcatcatcgaatacgtcgagtcaaagctcttctggt |
118 |
Q |
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| T |
47662968 |
agctaattgtttccatatggcagccactacctcttccacctgcagtggtttcttcaacttccgatcatcatcgaatacttcgagtcaaagctcttctggt |
47663067 |
T |
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| Q |
119 |
tgcagtggaaagcttgatggagtagctatgtggttaatcaacggtgtcactatggcnnnnnnnncatctttaaatcgttgctcttgcattcgcatcgcca |
218 |
Q |
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| T |
47663068 |
tgcagtggaaagcttgatggagtagctatgtggttaatcaacggtgtcactatggcttttttttcatctttaaatcgttgctcttgcattcgtatcgcca |
47663167 |
T |
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| Q |
219 |
ctgaagaagacggagaagatgccaatgagttgccattgatgttcaacgatggtactctccgccatgacggtaccaccagcaggagaaggactggtaaagg |
318 |
Q |
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| T |
47663168 |
ctgaagaagacggagaagatgccaatgagttgccattgatgttcaacgatggtactctccgccatgacggtaccaccagcaggagaaggactggtaaagg |
47663267 |
T |
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| Q |
319 |
gaagaaaagtgtacttgtccacgaacaatgatcaatgtctctttattttcatggtaagtgatatatattataatgttacatatgtgagagtttttctaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47663268 |
gaagaaaagtgtacttgtccacgaacaatgatcaatgtctctttattttcatggtaagtgatatatattataatgttacatatgtgagagtttttctaat |
47663367 |
T |
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| Q |
419 |
tgtgcgttcaaatcaaagcttatgttatttctggagatgaaaaatgaatatcaattaagatgcttgtaatattctcccctttg |
501 |
Q |
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| T |
47663368 |
tgtgcgttcaaatcaaagcttatgttatttctggagatgaaaaatgaatatcaattaagatgcttgtaatattctcccctttg |
47663450 |
T |
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