View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_17 (Length: 501)

Name: NF3892_high_17
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_17
NF3892_high_17
[»] chr7 (25 HSPs)
chr7 (1-483)||(10203173-10203666)
chr7 (6-463)||(12356112-12356582)
chr7 (6-359)||(12153375-12153743)
chr7 (6-462)||(19335150-19335634)
chr7 (39-344)||(9652805-9653123)
chr7 (1-275)||(19018729-19019017)
chr7 (138-280)||(23008882-23009027)
chr7 (7-146)||(11352670-11352809)
chr7 (17-146)||(30238736-30238863)
chr7 (17-146)||(30253136-30253263)
chr7 (7-112)||(6486243-6486347)
chr7 (193-280)||(11976862-11976949)
chr7 (160-280)||(8281048-8281174)
chr7 (160-280)||(11968831-11968954)
chr7 (33-146)||(13390858-13390971)
chr7 (8-112)||(23008740-23008844)
chr7 (33-144)||(10877895-10878006)
chr7 (37-143)||(16223172-16223277)
chr7 (160-282)||(11352223-11352351)
chr7 (403-483)||(12153239-12153320)
chr7 (163-241)||(30238625-30238706)
chr7 (163-241)||(30253025-30253106)
chr7 (160-241)||(5223646-5223730)
chr7 (6-144)||(10939614-10939752)
chr7 (59-116)||(16775708-16775765)
[»] chr1 (26 HSPs)
chr1 (1-344)||(17317149-17317506)
chr1 (1-344)||(29983862-29984218)
chr1 (1-359)||(25380199-25380560)
chr1 (53-344)||(17199621-17199925)
chr1 (13-244)||(20405573-20405819)
chr1 (1-225)||(15546151-15546387)
chr1 (138-280)||(18576878-18577022)
chr1 (22-146)||(18934968-18935092)
chr1 (138-287)||(13332706-13332858)
chr1 (138-275)||(23510609-23510747)
chr1 (7-109)||(24592239-24592341)
chr1 (385-483)||(17316993-17317093)
chr1 (17-146)||(22045511-22045640)
chr1 (22-103)||(23510794-23510875)
chr1 (384-483)||(13359142-13359243)
chr1 (6-85)||(15851728-15851807)
chr1 (422-483)||(15546549-15546610)
chr1 (386-483)||(20063964-20064061)
chr1 (7-91)||(13332916-13333000)
chr1 (7-112)||(18577060-18577166)
chr1 (408-483)||(29983678-29983755)
chr1 (53-146)||(25221076-25221169)
chr1 (427-462)||(17199502-17199537)
chr1 (160-282)||(18934814-18934942)
chr1 (57-116)||(19957409-19957468)
chr1 (197-282)||(22507271-22507360)
[»] chr5 (18 HSPs)
chr5 (1-357)||(29831007-29831377)
chr5 (1-344)||(27735692-27736049)
chr5 (13-339)||(22847165-22847504)
chr5 (6-324)||(23273975-23274306)
chr5 (33-344)||(16700954-16701278)
chr5 (280-473)||(26261057-26261262)
chr5 (3-146)||(19527158-19527300)
chr5 (53-146)||(24660764-24660857)
chr5 (6-146)||(24511127-24511267)
chr5 (17-282)||(25916877-25917161)
chr5 (399-483)||(27735541-27735627)
chr5 (160-282)||(18958525-18958653)
chr5 (7-70)||(20057291-20057354)
chr5 (383-460)||(29830892-29830970)
chr5 (7-94)||(18958360-18958446)
chr5 (163-241)||(19527329-19527410)
chr5 (193-241)||(20972372-20972420)
chr5 (51-105)||(24129523-24129577)
[»] scaffold0111 (2 HSPs)
scaffold0111 (1-362)||(25938-26310)
scaffold0111 (384-444)||(25843-25905)
[»] chr4 (7 HSPs)
chr4 (6-345)||(20323559-20323912)
chr4 (8-363)||(16661330-16661697)
chr4 (39-344)||(13523830-13524148)
chr4 (7-146)||(11554335-11554474)
chr4 (17-282)||(15782810-15783093)
chr4 (374-483)||(20323409-20323520)
chr4 (57-143)||(27919698-27919785)
[»] scaffold0032 (2 HSPs)
scaffold0032 (1-344)||(70532-70877)
scaffold0032 (427-460)||(70961-70994)
[»] scaffold0125 (1 HSPs)
scaffold0125 (1-344)||(6308-6665)
[»] chr6 (10 HSPs)
chr6 (84-359)||(24454350-24454627)
chr6 (139-463)||(25930969-25931301)
chr6 (6-128)||(25929578-25929700)
chr6 (62-183)||(16598661-16598793)
chr6 (8-112)||(22728228-22728333)
chr6 (11-112)||(24005508-24005609)
chr6 (51-116)||(18565166-18565231)
chr6 (193-259)||(22728068-22728134)
chr6 (160-209)||(20403368-20403417)
chr6 (422-462)||(24454284-24454324)
[»] scaffold0103 (3 HSPs)
scaffold0103 (13-344)||(39295-39639)
scaffold0103 (80-344)||(34980-35258)
scaffold0103 (437-478)||(39148-39189)
[»] scaffold0561 (1 HSPs)
scaffold0561 (1-344)||(552-907)
[»] chr8 (4 HSPs)
chr8 (4-275)||(24374696-24374970)
chr8 (47-344)||(16647667-16647977)
chr8 (7-112)||(22741574-22741679)
chr8 (159-275)||(17125186-17125308)
[»] chr3 (11 HSPs)
chr3 (13-344)||(14889239-14889583)
chr3 (31-282)||(42368837-42369102)
chr3 (7-146)||(24697870-24698009)
chr3 (6-282)||(25921962-25922256)
chr3 (6-282)||(24507747-24508042)
chr3 (385-478)||(7654125-7654220)
chr3 (6-112)||(15485999-15486106)
chr3 (193-280)||(12755272-12755359)
chr3 (17-146)||(1343552-1343681)
chr3 (160-241)||(16974139-16974220)
chr3 (57-116)||(13885779-13885838)
[»] chr2 (11 HSPs)
chr2 (8-196)||(22683886-22684086)
chr2 (6-241)||(17980341-17980589)
chr2 (6-241)||(26023372-26023622)
chr2 (160-250)||(21872374-21872464)
chr2 (17-146)||(17335549-17335679)
chr2 (193-241)||(17335439-17335487)
chr2 (53-146)||(39667081-39667174)
chr2 (17-143)||(29841890-29842016)
chr2 (422-462)||(23140547-23140587)
chr2 (422-462)||(23552337-23552377)
chr2 (57-105)||(23663011-23663059)


Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 10203666 - 10203173
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10203666 tcgagtgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 10203567  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatca-----------aacattcatattctagtggaagtccttggtggagacgttttcc 189  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||    
T  10203566 ataggaattgaagaatcagggtagtttcaaggaattcttgtaatcacattgtaatcaaacattcatattctagtggaagtccttggtggagacgttttcc 10203467  T
Q  190 atcaagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgt 289  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10203466 atcaagaatagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcggtgtcgtttctcttccttatcctctttaactttgattgattgt 10203367  T
Q  290 gtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaattagnnnnnnnacctcacttgtcatagat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||    
T  10203366 gtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaattagtttttttacctcacttgtaatagat 10203267  T
Q  390 cagacttggtttcaatctattgtcaatttgtcacacatacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaagat 483  Q
    || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  10203266 cacacttggtttcaatctattgtcaatttatcacacatacacaattgtgttcattagtataattgattaattgccattagatttcgtttgagat 10203173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 6 - 463
Target Start/End: Original strand, 12356112 - 12356582
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||||||||||| ||| ||| | |||||||||||||||||||||| |||| || ||| || ||| |||||| |||||||||| |||||| ||||||||    
T  12356112 tgaagagcttcaagtgtt-caccggtgattgaggattcgaagacatttagaaacagcaaatttaaaggttatttgaagattgggagagtgactgcatagg 12356210  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaatca-----------aacattcatattctagtggaagtccttggtggagacgttttccatcaa 194  Q
    ||||||||||  | |||||||||||||||||||||||||||           |||||||||||| |||||||||||||||||||||||||||| ||||||    
T  12356211 aattgaagaactgtggtagtttcaaggaattcttgtaatcacattgtaatcaaacattcatattatagtggaagtccttggtggagacgtttttcatcaa 12356310  T
Q  195 ga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgt 291  Q
    ||   ||| |||||||  ||||||| ||||||||    ||||||||||||||||| |||| | |||||||  |||||||||||| ||||||| ||| ||     
T  12356311 gaagagtaaacgtagcctgaagcgacgacgaaagagcaaactactataaatctcggtgtcttctctcttctctatcctctttaattttgattaattttgg 12356410  T
Q  292 atttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaattagnnnnnnnacctcacttgtcatagatca 391  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||       || ||| || |||||| |||    
T  12356411 atttgattgcttgataaattgttagagtagaaattgagtgtgatctaggttcattttgttaaacttgaattag--cttctacgtcagttttcataggtca 12356508  T
Q  392 gacttggtttcaatctattgtcaatttgtc--acacatacacaattgtgttcattagtataattgattaattgc 463  Q
     || |||||||||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||    
T  12356509 cacctggtttcaatttattgtcaatttatcaaacacatacacaattgtgttcattagtataattgattaattgc 12356582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 6 - 359
Target Start/End: Complemental strand, 12153743 - 12153375
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    ||||||||||||||| |||||||| ||||| ||||||| | ||||| ||||||||||||||||||| | |||| |||||||||||||||| || |||| |    
T  12153743 tgaagagcttcaaggattgcacgggtgattaaggattcaaggacatcaagaagcaccaatttcaaagggtatttgaagattgggggagtggtttcatatg 12153644  T
Q  106 aattgaagaa-tcggggtagtttcaaggaattcttgtaatca-----------aacattcatattctagtggaagtccttggtggagacgttttccatca 193  Q
    |||||||||  | |||||| ||| ||||||||||||||||||           ||||||||||||||||||||| |||||||||||||||||||||||||    
T  12153643 aattgaagagctaggggtaatttgaaggaattcttgtaatcacattgtaatcaaacattcatattctagtggaattccttggtggagacgttttccatca 12153544  T
Q  194 ---agagtagacgtagctcgaagcgaggacgaaaggttgaactactat-aaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgt 289  Q
       |||||||||||||| ||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||| | |||||||||| ||||  | |||||    
T  12153543 aggagagtagacgtagcccgaagcgaggaagaaagggtgaactactataaaatctcaatgtcgtttctcttccctttcctctttaattttg-ctaattgt 12153445  T
Q  290 gtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttga 359  Q
    |||| || ||||||||||||||||| || |||||| |||  ||||||| | || |  |||||||||||||    
T  12153444 gtatatgcttgcttgataaattgttggaatagaaattgaacgtgatcttgtttcaacttgttaaacttga 12153375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 6 - 462
Target Start/End: Complemental strand, 19335634 - 19335150
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||||| |||||||||||||   |||||||||||| |||||||| |||||||| |||||||||| |||||| ||||||||| ||||||||||||||||    
T  19335634 tgaagagcatcaagggttgcacatgtgattgaggatt-gaagacatcaagaagcatcaatttcaaaggttatttgaagattggaggagtgattgcatagg 19335536  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaa-----------tcaaaca--ttcatattctagtggaagtccttggtggagacgttttccatc 192  Q
    ||||||||||   ||||  |||||||||||||||||||           |||||||  ||||||||| | ||||||||||||||||| || |||||||||    
T  19335535 aattgaagaactagggtcttttcaaggaattcttgtaaccacattgtaatcaaacacattcatattcgaatggaagtccttggtggaaacattttccatc 19335436  T
Q  193 aaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgt 289  Q
    ||||   || || |||| ||||||| |||| ||||||  |||||| |||||||||||||||| |  |||||   |||||||||||| || |||| ||  |    
T  19335435 aagaagagtggaggtaggtcgaagcaaggaagaaagggggaactattataaatctcgatgtcttcactcttttctatcctctttaatttagattaatcat 19335336  T
Q  290 gtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaatta-----------gnnnnnnnacctcac 378  Q
    ||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| |||                   |||||||    
T  19335335 gtatttgattgcttgataaattgttagagtagaaattgattctgatctaggtttattttgttaaatttgagttacttctttgaattagcttttacctcac 19335236  T
Q  379 ttgtcatagatcagacttggtttcaatctattgtcaatttgtc--acacatacacaattgtgttcattagtataattgattaattg 462  Q
    || | |||||||| | |||||||||||||||||| | ||| ||  | |||||||||||||||||||||||||||||||||||||||    
T  19335235 tttttatagatcacaattggtttcaatctattgttagtttatcaaatacatacacaattgtgttcattagtataattgattaattg 19335150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 344
Target Start/End: Complemental strand, 9653123 - 9652805
Alignment:
Q  39 gattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattct 138  Q
    ||||||||||||| ||||||||||||||||||| | | || ||| |||||||||||||||||||| |||||||| ||   ||||||||||||||||||||    
T  9653123 gattcgaagacatcaagaagcaccaatttcaaaaggtttt-gaaaattgggggagtgattgcataagaattgaataactagggtagtttcaaggaattct 9653025  T
Q  139 tgt-----------aatcaaacattca-tattctagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaa 223  Q
    |||           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||   ||||||||||| | |||| | ||||||    
T  9653024 tgtcatcacattgtaatcaaacattcaatattctagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaa 9652925  T
Q  224 aggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaa 323  Q
    ||| ||||||||||||||||||| |||  | |||||||   ||||||||||| |||| || |||||||||||||  ||||||||||||| ||| |  |||    
T  9652924 agggtgaactactataaatctcggtgttttctctcttctcaatcctctttaattttgcttaattgtgtatttga-agcttgataaattgatagtgatgaa 9652826  T
Q  324 actgagtgtgatctaggttta 344  Q
    | | |||||| ||||||||||    
T  9652825 attaagtgtggtctaggttta 9652805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 19018729 - 19019017
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| |||||| | |||||||| ||||||||||||||||||| | ||||| ||||||||||||| | |||| |||||||||||||||||||||    
T  19018729 tcgagtgaagatcttcaaagattgcacgggtgattgaggattcgaagacttgaagaaacaccaatttcaaagggtatttgaagattgggggagtgattgc 19018828  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattc--------------ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttt 186  Q
    ||  |||||||| |||  |||||  || ||||| |||              ||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  19018829 atgagaattgaa-aattagggta-attgaaggagttcttgtaatcacaacattgtaatcaaacattca-attttagtggaagtccttggtggagacgttt 19018925  T
Q  187 tccatcaag---agtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaa 275  Q
     ||||||||   |||||| ||| | ||||| |||||||||| |   ||||||| ||||||||| |||| ||||| |||||| ||||||||||    
T  19018926 accatcaagaaaagtagatgtatcccgaagtgaggacgaaatggaaaactactgtaaatctcggtgtcatttctgttccttttcctctttaa 19019017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 138 - 280
Target Start/End: Original strand, 23008882 - 23009027
Alignment:
Q  138 ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccatc---aagagtagacgtagctcgaagcgaggacgaaaggttgaacta 234  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||   ||||||| ||||| | ||| ||||||| ||||||   |||||    
T  23008882 ttgtaatcaaacattcaaattctagtggaagtccttggtagagacgttttctatcaagaagagtaaacgtaccccgaggcgaggatgaaaggggaaacta 23008981  T
Q  235 ctataaatctcgatgtcgtttctcttccttatcctctttaactttg 280  Q
    |||||||||||| ||||||||||||||| | |||||||| ||||||    
T  23008982 ctataaatctcggtgtcgtttctcttccctttcctcttttactttg 23009027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 11352809 - 11352670
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| | |||||| | |||| |||| ||||||||||| || ||||||     
T  11352809 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcacccaattcaaaggatatttgaagtttgggggagtggttacataggg 11352710  T
Q  107 attgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
     ||||||||   || ||||||||||||| |||||||||||    
T  11352709 gttgaagaactaggatagtttcaaggaactcttgtaatca 11352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 30238863 - 30238736
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||| |||||| | |||| |||| |||||| |||| || ||| ||  ||||||||     
T  30238863 aagggttgcacgggtgattgaggattcgaagacatcgagaagcaccaaattcaaagggtatttgaagtttggggaagtggttacatggg--ttgaagaac 30238766  T
Q  117 cggggtagtttcaaggaattcttgtaatca 146  Q
      || ||||||||||||| |||||||||||    
T  30238765 taggatagtttcaaggaactcttgtaatca 30238736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 30253263 - 30253136
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||||||||||| |||||||||||||||||||||  ||||||||||| |||||| | |||| |||| |||||| |||| || ||| ||  ||||||||     
T  30253263 aagggttgcacgggtgattgaggattcgaagacatcgagaagcaccaaattcaaagggtatttgaagtttggggaagtggttacatggg--ttgaagaac 30253166  T
Q  117 cggggtagtttcaaggaattcttgtaatca 146  Q
      || ||||||||||||| |||||||||||    
T  30253165 taggatagtttcaaggaactcttgtaatca 30253136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 6486243 - 6486347
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 106  Q
    |||||||||||||| |||||||  ||| ||||||||||||||| | ||||| ||| ||||||||| | |||| ||||||||||||||||||||| ||| |    
T  6486243 gaagagcttcaaggattgcacgagtgactgaggattcgaagacttgaagaaacactaatttcaaa-ggtatttgaagattgggggagtgattgcgtagaa 6486341  T
Q  107 attgaa 112  Q
    ||||||    
T  6486342 attgaa 6486347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 11976862 - 11976949
Alignment:
Q  193 aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttg 280  Q
    ||||||||||||| ||||||||||||||||||     |||||||||||||| ||||||| |||||||||| | |||||||| ||||||    
T  11976862 aagagtagacgtacctcgaagcgaggacgaaaaagaaaactactataaatcccgatgtcttttctcttccctttcctcttttactttg 11976949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 8281048 - 8281174
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaagagtag---acgtagctcgaagcgaggacgaaaggttgaactactat--aaatctcgatgtcgtt 254  Q
    ||||||| | |||||||||||||||||| || |||||  ||   ||||||| |||||||||||||||||| ||||| |||||  |||| ||| |||||||    
T  8281048 tagtggatgaccttggtggagacgtttttcaccaagaagagttaacgtagcccgaagcgaggacgaaagggtgaacaactataaaaatatcggtgtcgtt 8281147  T
Q  255 -tctcttccttatcctctttaactttg 280  Q
     ||| ||||||||||||||||| ||||    
T  8281148 ctcttttccttatcctctttaattttg 8281174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 11968831 - 11968954
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttc 256  Q
    |||||||||| |||| | ||||||||||| | |||||   ||||||||| ||||||||||||| ||||    ||||||||||||||  || |||| ||||    
T  11968831 tagtggaagttcttgatagagacgttttctaccaagaagagtagacgtacctcgaagcgaggatgaaaaagggaactactataaattccggtgtcttttc 11968930  T
Q  257 tcttccttatcctctttaactttg 280  Q
    |||||| | |||||||| ||||||    
T  11968931 tcttccctttcctcttttactttg 11968954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 146
Target Start/End: Original strand, 13390858 - 13390971
Alignment:
Q  33 attgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaagg 132  Q
    ||||||||||||| ||| | |||||||||||| || |||  ||||| |||| ||||||||||| || ||||||  ||||||||   || ||||| |||||    
T  13390858 attgaggattcgaggacttcaagaagcaccaaatttaaagtttatttgaagtttgggggagtgcttacataggggttgaagaactaggatagttccaagg 13390957  T
Q  133 aattcttgtaatca 146  Q
    || |||||||||||    
T  13390958 aactcttgtaatca 13390971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 23008740 - 23008844
Alignment:
Q  8 aagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaa 107  Q
    ||||||||||||| ||||||   |||| ||||  ||||| || | || || ||||||||||||| | |||| |||||||| |||||| ||||||||||||    
T  23008740 aagagcttcaaggattgcaccagtgatcgaggggtcgaatacttgaaaaaacaccaatttcaaagggtatttgaagattgtgggagtaattgcataggaa 23008839  T
Q  108 ttgaa 112  Q
    |||||    
T  23008840 ttgaa 23008844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 144
Target Start/End: Complemental strand, 10878006 - 10877895
Alignment:
Q  33 attgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaagg 132  Q
    ||||||||||||||||||| ||||||||| || |||||| |||||| || | ||||||||||| ||   ||||  ||||||||    | |||||||||||    
T  10878006 attgaggattcgaagacatcaagaagcacaaaattcaaaggttatttgacgtttgggggagtgcttatgtaggggttgaagaactaagatagtttcaagg 10877907  T
Q  133 aattcttgtaat 144  Q
    || |||||||||    
T  10877906 aactcttgtaat 10877895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 16223277 - 16223172
Alignment:
Q  37 aggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaatt 136  Q
    |||||||||||| || ||| ||||| || |||||| |||||| |||| ||||||||||| |||||||||  |||||||||  |  || |||||||||| |    
T  16223277 aggattcgaaga-atcaaggagcacaaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaattagtttaatttcaaggaact 16223179  T
Q  137 cttgtaa 143  Q
    |||||||    
T  16223178 cttgtaa 16223172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 11352351 - 11352223
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaa--tctcgatgtcgtt 254  Q
    |||||||| ||||| |||||| |||||| || |||||   ||||| ||||| | || ||| || |||||| ||||||||||||||  | | | |||||||    
T  11352351 tagtggaaatccttcgtggaggcgtttttcaccaagaagagtagatgtagcccaaaacgaagaggaaaggatgaactactataaaaatattggtgtcgtt 11352252  T
Q  255 t-ctcttccttatcctctttaactttgat 282  Q
    | |||||||||||||||||||| ||||||    
T  11352251 ttctcttccttatcctctttaattttgat 11352223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 483
Target Start/End: Complemental strand, 12153320 - 12153239
Alignment:
Q  403 aatctattgtcaatttgtca--cacatacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaagat 483  Q
    |||||||||||||||| |||  |||||| ||  ||||||||||||||||||||| ||||||||  |||||||| |||| ||||    
T  12153320 aatctattgtcaatttatcaaacacatatacc-ttgtgttcattagtataattgtttaattgcttttaggtttggtttgagat 12153239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 30238706 - 30238625
Alignment:
Q  163 tggaagtccttggtggagacgtttt---ccatcaagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    |||||||||||||||||||||||||   |||  ||||||||| ||| | |||||||| || ||||||  |||||||||||||    
T  30238706 tggaagtccttggtggagacgtttttcaccaagaagagtagatgtaacccgaagcgatgatgaaagggcgaactactataaa 30238625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 30253106 - 30253025
Alignment:
Q  163 tggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    ||||||||||||||||| ||||||| || |||||   ||||| ||| | |||||||| |||||||||  |||||||||||||    
T  30253106 tggaagtccttggtggatacgtttttcaccaagaagagtagatgtaacccgaagcgatgacgaaagggcgaactactataaa 30253025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 241
Target Start/End: Complemental strand, 5223730 - 5223646
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    ||||||| | ||||||| |||||||||| || |||||   || |||||| | |||||||||||||||||| ||||| ||||||||    
T  5223730 tagtggatgaccttggtagagacgtttttcaccaagaagagttgacgtaacccgaagcgaggacgaaaggatgaacaactataaa 5223646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 144
Target Start/End: Original strand, 10939614 - 10939752
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||||||| ||||||  |||   ||||||| ||||| ||||||| |||||||||||| |||||| | |||| |||| ||   |||||| || ||||||    
T  10939614 tgaagagcttgaagggtcacactagtgattgatgattcaaagacatcaagaagcaccaaattcaaagggtatttgaagttttttggagtggttacatagg 10939713  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaat 144  Q
      ||||||||   || ||||||||||||| | |||||||    
T  10939714 ggttgaagaactaggatagtttcaaggaacttttgtaat 10939752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 16775765 - 16775708
Alignment:
Q  59 caccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    |||||| |||||| |||||| |||| ||||||||||| |||||||||  |||||||||    
T  16775765 caccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaat 16775708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 17317506 - 17317149
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||    
T  17317506 tcgagtgaagaacttcaagggttgcacgggtgattgaggattcgaagacatcaagaagcaccaatttcaaaggttatttgaagattgggggagtgattgc 17317407  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttg-----------taatcaaacattcatattctagtggaagtccttggtggagacgttttcc 189  Q
    |||||||||||||||   ||||||||||||||||||||||           ||||||||||||   |||||| |||||||||||||||||||||||||||    
T  17317406 ataggaattgaagaactagggtagtttcaaggaattcttgtaaacacattttaatcaaacattatcattctattggaagtccttggtggagacgttttcc 17317307  T
Q  190 atc---aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgat 286  Q
    |||   |||||| |||||||| ||||||||||||||||||  |||||||||||||||||| |||| | |||||||  |||||||||||| ||||||| ||    
T  17317306 atcaagaagagttgacgtagcccgaagcgaggacgaaagggcgaactactataaatctcggtgtcttctctcttctctatcctctttaattttgattaat 17317207  T
Q  287 tgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
    | |||||||||| ||||||||||||  ||| ||||| | |||||||||| ||||||||    
T  17317206 tatgtatttgatcgcttgataaatttctagtgtagagattgagtgtgatttaggttta 17317149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 29984218 - 29983862
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| ||||||||||||||| | ||||||| ||||| ||||||| |||||||||||||||||||  ||||| |||||||||||||||||||||    
T  29984218 tcgagtgaagaacttcaagggttgcacaggtgattgaagattcaaagacatcaagaagcaccaatttcaaagcttatttgaagattgggggagtgattgc 29984119  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatc-----------aaacattcatattctagtggaagtccttggtggagacgttttcc 189  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||           |||||||   |||||||||||||||||  ||||||| |||||||    
T  29984118 ataggaactgaagaattagggtagtttcaaggaattcttgtaatcacattgtaattaaacattatcattctagtggaagtcctctgtggagaggttttcc 29984019  T
Q  190 atc---aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgat 286  Q
    |||   ||||||||||||||| |||||||| || ||||||  |||| ||||||||||| | |||| | ||||||   |||||||||||| ||||||| ||    
T  29984018 atcgagaagagtagacgtagcccgaagcgatgatgaaagggcgaacaactataaatcttggtgtcttctctcttttctatcctctttaattttgattaat 29983919  T
Q  287 tgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
    |||||||||||  ||||||||||||| ||| ||||| | |||||||||||||| ||||    
T  29983918 tgtgtatttga-agcttgataaattgctagtgtagagattgagtgtgatctagtttta 29983862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 25380199 - 25380560
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| ||||||| ||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| | |||| |||||||| ||||||| ||||    
T  25380199 tcgagtgaagagattcaaggattgcacgggtgattgaggattcgaagacatcaagaagcaccaatttcaaagggtatttgaagattgagggagtggttgc 25380298  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccatc---aagag 197  Q
    |||  ||||||||| |  ||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||| | |||||| |||||||| |   |||||    
T  25380299 ataataattgaagagttagggtagtttgaaggaatccttgtaatcaaacattcacattttagtggaagtcctcgatggagatgttttccaccaagaagag 25380398  T
Q  198 tagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattga-ttgtgtatttg 296  Q
    |||| ||||| |||||||||||||||||| ||||||||| ||||| ||  ||||||||||||| ||  |||||||||| ||| ||| | |||||||| |     
T  25380399 tagatgtagcccgaagcgaggacgaaagggtgaactactgtaaatttcagtgtcgtttctctttctattcctctttaa-tttcatttatttgtgtatatt 25380497  T
Q  297 attgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttga 359  Q
     | | |||||||||||||| | |||||| ||| | |||| | | || || |||||||||||||    
T  25380498 ctagtttgataaattgttaaaatagaaattgaatttgattttgtttcatcttgttaaacttga 25380560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 53 - 344
Target Start/End: Complemental strand, 17199925 - 17199621
Alignment:
Q  53 aagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaatca------ 146  Q
    |||||||| |||||||||| | | || ||||||||| ||||||||||||||||||||||||||     ||||||||||||||||||||||||||          
T  17199925 aagaagcatcaatttcaaaaggtttt-gaagattggcggagtgattgcataggaattgaagaactattgtagtttcaaggaattcttgtaatcacattgt 17199827  T
Q  147 -----aacattca-tattctagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactacta 237  Q
         |||||||| |||||||||||||||| ||||||||| | |||||||||||||   ||||| ||||| |||||||||||||||||| ||||||||||    
T  17199826 aatcaaacattcaatattctagtggaagtcgttggtggaggcattttccatcaagaagagtagatgtagcccgaagcgaggacgaaagggtgaactacta 17199727  T
Q  238 taaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatct 337  Q
    ||||||||| |||  | |||||||  ||| |||||||| |||| || ||| ||||||||| | |||| ||||||| ||| ||||||| |||| |||||||    
T  17199726 taaatctcggtgttttctctcttctctattctctttaattttgtttaattttgtatttgaat-cttgttaaattgatagtgtagaaattgagagtgatct 17199628  T
Q  338 aggttta 344  Q
    |||||||    
T  17199627 aggttta 17199621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 20405819 - 20405573
Alignment:
Q  13 cttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaa 112  Q
    ||||||||||||||| | ||||||   ||||| |||||| | ||||||| ||||||||| |||||| ||||||||||||||| |||||||||||| |||     
T  20405819 cttcaagggttgcacaggtgattgcatattcgtagacatcatgaagcacaaatttcaaaggttatttgaagattgggggagtaattgcataggaactgac 20405720  T
Q  113 gaatcggggtagtttcaaggaattc-----------ttgtaatcaaacattc-atattctagtggaagtccttggtggagacgttttccatc---aagag 197  Q
    |||    ||||||||||||||||||           |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||   |||||    
T  20405719 gaactatggtagtttcaaggaattcttgtaatcacattgtaatcaaacattcaatattctagttgaagtccttggtggagatgttttccatcaagaagag 20405620  T
Q  198 tagacgtagctcgaagcgaggacgaaaggttgaactactataaatct 244  Q
    | || |||||||||||||||||||||||  ||||| ||| |||||||    
T  20405619 tggatgtagctcgaagcgaggacgaaagagtgaaccactgtaaatct 20405573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15546151 - 15546387
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| |||||||| ||||| || ||||||| ||||  ||||||| || ||||||| |||||||| |||||| |||| |||||  |||||||||    
T  15546151 tcgagtgaagaacttcaaggtttgcatgggtgattgaagattgaaagacatcaataagcaccgatttcaaaggttatttgaagcttggga-agtgattgc 15546249  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattc-----------ttgtaatcaaacattca-tattctagtggaagtccttggtggagacgttttc 188  Q
    |||||||||||||||   |||||||||||||||||||           ||||||||||||||||| |||||||||||||||| ||||||||||||| |||    
T  15546250 ataggaattgaagaac--gggtagtttcaaggaattcttgtaatcacgttgtaatcaaacattcattattctagtggaagtctttggtggagacgtattc 15546347  T
Q  189 catc---aagagtagacgtagctcgaagcgaggacgaaag 225  Q
    ||||   |||||| || |||||| ||||||||||||||||    
T  15546348 catcaagaagagtggatgtagcttgaagcgaggacgaaag 15546387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 18577022 - 18576878
Alignment:
Q  138 ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaacta 234  Q
    ||||||||||||||||| ||| |||||||||||||| || ||||||||||| | |||||   ||||||||| | |||  |||||||||||||  ||||||    
T  18577022 ttgtaatcaaacattca-attttagtggaagtcctttgtagagacgttttctaccaagaagagtagacgtaccccgatacgaggacgaaagggggaacta 18576924  T
Q  235 ctataaatctcgatgtcgtttctcttccttatcctctttaactttg 280  Q
    |||||||||||  ||||||||||||||| | |||||||| ||||||    
T  18576923 ctataaatctcagtgtcgtttctcttccctttcctcttttactttg 18576878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 18935092 - 18934968
Alignment:
Q  22 ttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcgggg 121  Q
    |||||| | |||||||||||||||||||||  ||||||||||| |||||| |||||| |||| ||||||||||| || ||| ||  ||||||||   ||     
T  18935092 ttgcacaggtgattgaggattcgaagacatcgagaagcaccaaattcaaaggttatttgaagtttgggggagtgcttacatgggggttgaagaagtagga 18934993  T
Q  122 tagtttcaaggaattcttgtaatca 146  Q
    ||||||||||||| |||||||||||    
T  18934992 tagtttcaaggaactcttgtaatca 18934968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 138 - 287
Target Start/End: Complemental strand, 13332858 - 13332706
Alignment:
Q  138 ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttc----catcaagagtagacgtagctcgaagcgaggacgaaaggttgaact 233  Q
    ||||||| ||||||||| |||||||||||||||||| || ||||||||||     ||  ||||| ||||||| | |||||| |||| ||||||   ||||    
T  13332858 ttgtaattaaacattca-attctagtggaagtccttagtagagacgtttttttaacaagaagaggagacgtaccccgaagcaaggatgaaaggggaaact 13332760  T
Q  234 actataaatctcgatgtcgtttctcttccttatcctctttaactttgattgatt 287  Q
    ||||||||||||| |||||||| |||||| | |||||||| |||||| ||||||    
T  13332759 actataaatctcgttgtcgtttatcttccctttcctcttttactttgtttgatt 13332706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 275
Target Start/End: Complemental strand, 23510747 - 23510609
Alignment:
Q  138 ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccatcaag---agtagacgtagctcgaagcgaggacgaaaggttgaacta 234  Q
    ||||||||| | ||||| ||| ||||||||||||||||||||||||||||||||||||   |||| ||||| | ||||||||| || |||||  ||||||    
T  23510747 ttgtaatcagaaattca-attttagtggaagtccttggtggagacgttttccatcaagaaaagtaaacgtaccccgaagcgagaac-aaagggggaacta 23510650  T
Q  235 ctataaatctcgatgtcgtttctcttccttatcctctttaa 275  Q
    |||||||| |   || |||||||||||| | ||||||||||    
T  23510649 ctataaatattcgtgccgtttctcttccctttcctctttaa 23510609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 24592341 - 24592239
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 106  Q
    |||||||||||||| ||  | || ||||||| ||||| ||||| ||||||| ||||||||||||| | |||| ||||||||||||||||| |||||| ||    
T  24592341 gaagagcttcaaggattttatgggtgattgaagattcaaagactttaagaaacaccaatttcaaagggtatttgaagattgggggagtgactgcatatga 24592242  T
Q  107 att 109  Q
    |||    
T  24592241 att 24592239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 385 - 483
Target Start/End: Complemental strand, 17317093 - 17316993
Alignment:
Q  385 tagatcagacttggtttcaatctattgtcaatttgtcacaca--tacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaaga 482  Q
    ||||||| |||| ||||||||||||||||||||| ||| |||  |||||||||||| ||||| |||||||||||| |||||  |||||||| |||| |||    
T  17317093 tagatcacacttagtttcaatctattgtcaatttatcaaacacttacacaattgtgctcatttgtataattgattgattgctcttaggtttggtttgaga 17316994  T
Q  483 t 483  Q
    |    
T  17316993 t 17316993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 22045511 - 22045640
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||||| || || ||||| ||||||| ||||||| |||||||||||| |||||| ||||||  ||||||||||||||| || ||||||  ||||||||     
T  22045511 aagggtttcatgggtgattaaggattcaaagacatcaagaagcaccaaattcaaaggttatttaaagattgggggagtgtttacataggggttgaagaac 22045610  T
Q  117 cggggtagtttcaaggaattcttgtaatca 146  Q
      || |||||| |||||| ||| |||||||    
T  22045611 taggatagttttaaggaactctagtaatca 22045640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 23510875 - 23510794
Alignment:
Q  22 ttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcata 103  Q
    |||||||| |||||| |||||||||||| | ||||| ||||||||||||| | |||| |||| |||||||||||||||||||    
T  23510875 ttgcacgggtgattgtggattcgaagacttgaagaaacaccaatttcaaagggtatttgaaggttgggggagtgattgcata 23510794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 384 - 483
Target Start/End: Original strand, 13359142 - 13359243
Alignment:
Q  384 atagatcagacttggtttcaatctattgtcaatttgtcacaca--tacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaag 481  Q
    |||||||| |||| |||| |||||||||||||||| ||| |||  ||||||||||||||| ||| ||| |||||||||||||  |||||||| |||| ||    
T  13359142 atagatcacacttagttttaatctattgtcaatttatcaaacacttacacaattgtgttctttaatatgattgattaattgcttttaggtttagtttgag 13359241  T
Q  482 at 483  Q
    ||    
T  13359242 at 13359243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 15851807 - 15851728
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagat 85  Q
    |||||||||||| ||||||||||| ||||| | ||||| ||||| | ||||||||||||||||||| | |||| ||||||    
T  15851807 tgaagagcttcatgggttgcacgggtgattcacgattcaaagacttcaagaagcaccaatttcaaagggtattagaagat 15851728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 483
Target Start/End: Original strand, 15546549 - 15546610
Alignment:
Q  422 acacatacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaagat 483  Q
    |||| ||||||||||||||| ||||||||||||||||||||   |||||||| |||||||||    
T  15546549 acacttacacaattgtgttctttagtataattgattaattgttcttaggtttggtttaagat 15546610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 483
Target Start/End: Complemental strand, 20064061 - 20063964
Alignment:
Q  386 agatcagacttggtttcaatctattgtcaatttgtcacacatacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaagat 483  Q
    |||||| |||| ||||||||  ||||||||||| ||  |||   |||||||||||||| ||||||||||||||||||| ||||| ||| |||| ||||    
T  20064061 agatcacacttagtttcaattcattgtcaatttatcgaacacttacaattgtgttcataagtataattgattaattgctattagatttggtttgagat 20063964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 13333000 - 13332916
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattggggg 91  Q
    |||||||||||||  ||||| || ||||||| |||| |||||| | ||||| ||||||||||||| | |||| ||||||||||||    
T  13333000 gaagagcttcaagtattgcatgggtgattgaagatttgaagacttgaagaaacaccaatttcaaagggtatttgaagattggggg 13332916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 18577166 - 18577060
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattggggg-agtgattgcatagg 105  Q
    |||||| ||||||| ||||| || | ||||| ||||||||||| | ||||| ||||||||||||||| |||| | |||| |||||  ||  |||||||||    
T  18577166 gaagagattcaaggattgcatgggtaattgaagattcgaagacttgaagaaacaccaatttcaaatggtatttgtagatcgggggttgtagttgcatagg 18577067  T
Q  106 aattgaa 112  Q
    |||||||    
T  18577066 aattgaa 18577060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 408 - 483
Target Start/End: Complemental strand, 29983755 - 29983678
Alignment:
Q  408 attgtcaatttgtcacaca--tacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaagat 483  Q
    ||||||||||| ||| |||  ||||||| ||||||||| |||||||||||||||||||  |||||||| |||| ||||    
T  29983755 attgtcaatttatcaaacacttacacaactgtgttcatcagtataattgattaattgctcttaggtttggtttgagat 29983678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 25221076 - 25221169
Alignment:
Q  53 aagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
    |||||||||||| ||||||  ||||| |||| ||||||||||  || ||||||| ||||||||   || |||||| |||||| |||||||||||    
T  25221076 aagaagcaccaaattcaaagattatttgaagtttgggggagtccttacataggagttgaagaactaggatagtttaaaggaactcttgtaatca 25221169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 462
Target Start/End: Complemental strand, 17199537 - 17199502
Alignment:
Q  427 tacacaattgtgttcattagtataattgattaattg 462  Q
    |||||||||||||| |||||||||||||||||||||    
T  17199537 tacacaattgtgttaattagtataattgattaattg 17199502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 18934942 - 18934814
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactat--aaatctcgatgtcgtt 254  Q
    ||||||| | ||||| ||||| |||||| || |||||   ||||||||||| ||||||| ||| |||||| |||||||||||  |||| | | |||| ||    
T  18934942 tagtggatgaccttgctggaggcgtttttcaccaagaacagtagacgtagcccgaagcggggatgaaagggtgaactactataaaaatattggtgtcatt 18934843  T
Q  255 -tctcttccttatcctctttaactttgat 282  Q
     ||| ||||||||||||||||| ||||||    
T  18934842 ctcttttccttatcctctttaattttgat 18934814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 19957468 - 19957409
Alignment:
Q  57 agcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    |||||||| |||||| |||||| |||| ||||||||||| |||||||||  |||||||||    
T  19957468 agcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaat 19957409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 282
Target Start/End: Complemental strand, 22507360 - 22507271
Alignment:
Q  197 gtagacgtagctcgaagcgaggacgaaaggttgaactac--tataaatctcgatgtcgtt-tctctt-ccttatcctctttaactttgat 282  Q
    ||||| ||||| |||||||||||||||||| ||||||||  || |||||||| ||||||| ||| || |||||||||||| || ||||||    
T  22507360 gtagatgtagcccgaagcgaggacgaaagggtgaactacaataaaaatctcggtgtcgttctcttttcccttatcctcttcaagtttgat 22507271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 167; Significance: 3e-89; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 29831377 - 29831007
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||| ||||||| | |||| ||||||| |||||||| ||||    
T  29831377 tcgagtgaagagcttcaagggttgcacaggtgattcaggattcgaagacataaagaagcaccagtttcaaagggtatttgaagattaggggagtggttgc 29831278  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgta-----------atcaaacattcatattctagtggaagtccttggtggagacgttttcc 189  Q
    |||||||||||||||    ||||||||||||||||| || ||           |||||||||||||||||||||||||||||||||||||||| || |||    
T  29831277 ataggaattgaagaactaaggtagtttcaaggaattattttagtcacattataatcaaacattcatattctagtggaagtccttggtggagacattctcc 29831178  T
Q  190 atcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgat 286  Q
    |||||||   || |||||||  ||||||||||| |||||| ||||||||||||||||||||| || |||||||||| |||||||||||| ||||||| ||    
T  29831177 atcaagaagagtggacgtagaccgaagcgaggaagaaagggtgaactactataaatctcgatatcttttctcttccctatcctctttaattttgattaat 29831078  T
Q  287 tgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaactt 357  Q
    ||||||| || |||||||||||||| |||   || ||| || |||||||||||||||||||||||||||||    
T  29831077 tgtgtatatgcttgcttgataaatttttatgttaaaaattgtgtgtgatctaggtttattttgttaaactt 29831007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 27736049 - 27735692
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| ||||||||||| ||||| | ||||| ||||| ||||||| ||||||||||||||||||| |||||| ||||||| |||||||||||||    
T  27736049 tcgagtgaagaacttcaagggtttcacgggttattgaagattcaaagacatcaagaagcaccaatttcaaaggttatttgaagattaggggagtgattgc 27735950  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatcaaa-----------cattcatattctagtggaagtccttggtggagacgttttcc 189  Q
    ||| |||||||||||   ||||||||||||| |||||||||||||| |           ||||   ||||||||||||||||||||||||| |||||| |    
T  27735949 atatgaattgaagaactagggtagtttcaagaaattcttgtaatcacattgtaatcaagcattatcattctagtggaagtccttggtggaggcgtttttc 27735850  T
Q  190 atcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgat 286  Q
    |||||||   |||||| ||||  |||||||||| |||||   ||||||||||||||||||||||| | |||||||   ||||||||||| ||||||| ||    
T  27735849 atcaagaagtgtagacatagcctgaagcgaggatgaaagagcgaactactataaatctcgatgtcttctctcttctccatcctctttaattttgattaat 27735750  T
Q  287 tgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
    ||||||||||||| |||||||||||| ||| ||||| | |||||||||||||||||||    
T  27735749 tgtgtatttgatttcttgataaattgctagtgtagagattgagtgtgatctaggttta 27735692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 22847165 - 22847504
Alignment:
Q  13 cttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaa 112  Q
    ||||||||||||||||| | ||||| |||||||||| || |||||||||| |||||||| | | || ||||||||||||||||||||||| |||||||||    
T  22847165 cttcaagggttgcacgggtaattgaagattcgaagatatcaagaagcaccgatttcaaaaggtttt-gaagattgggggagtgattgcattggaattgaa 22847263  T
Q  113 gaatcggggtagtttcaaggaattcttgtaatca-----------aacattca-tattctagtggaagtccttggtggagacgttttccatc---aagag 197  Q
    ||||  ||||||||||||||||||||||||||||           |||||||| |||||||||||||||||||||||||| |||||||||||   |||||    
T  22847264 gaattagggtagtttcaaggaattcttgtaatcactttgtaatcaaacattcaatattctagtggaagtccttggtggaggcgttttccatcaagaagag 22847363  T
Q  198 tagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttga 297  Q
    | ||||||||  |||||| |||||||||| |||||||||| |||||||| |||  | ||||||   ||| ||||||||  |||||| ||| |||||||||    
T  22847364 tggacgtagcctgaagcggggacgaaagggtgaactactacaaatctcggtgttttctctcttttctatactctttaatgttgattaattctgtatttga 22847463  T
Q  298 ttgcttgataaattgttagagtagaaactgagtgtgatctag 339  Q
      ||||||||||||| ||| ||||||| | ||||||||||||    
T  22847464 -agcttgataaattgatagtgtagaaattaagtgtgatctag 22847504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 6 - 324
Target Start/End: Complemental strand, 23274306 - 23273975
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||| ||||||||||||||||  | ||||| ||||||||||||| |||||||| ||||||| || | | || ||||||| ||||||||||||||||||    
T  23274306 tgaagaacttcaagggttgcacgagtaattgaagattcgaagacatcaagaagcatcaatttcgaaaggtttt-gaagatttggggagtgattgcatagg 23274208  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgta-----------atcaaacattcat-attctagtggaagtccttggtggagacgttttccatca 193  Q
    ||||||||||   ||||||||||||||||||||||||           ||||||||||||| |||||| |||||||| ||||||||  | ||||||||||    
T  23274207 aattgaagaactagggtagtttcaaggaattcttgtattcacattgtaatcaaacattcattattctactggaagtctttggtggaatcattttccatca 23274108  T
Q  194 aga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtg 290  Q
    |||   ||||||||||| |||||||||||||||||| ||||||||||||||||| | |||  | |||||||  |||||||| ||| | ||||| ||||||    
T  23274107 agaagagtagacgtagcccgaagcgaggacgaaaggatgaactactataaatcttggtgttctctctcttctctatcctctataattctgattaattgtg 23274008  T
Q  291 tatttgattgcttgataaattgttagagtagaaa 324  Q
    |||||||  ||||||||||||| ||| |||||||    
T  23274007 tatttga-agcttgataaattgatagtgtagaaa 23273975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 344
Target Start/End: Original strand, 16700954 - 16701278
Alignment:
Q  33 attgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaagg 132  Q
    ||||| |||| |||||||| ||||||| | ||||||||| | | || |||||||| |||||| |||||||||| |||||||||   |||||||||||||     
T  16700954 attgaagatttgaagacatcaagaagcccaaatttcaaagggtttt-gaagattgagggagtaattgcataggcattgaagaaatagggtagtttcaaga 16701052  T
Q  133 aattctt-----------gtaatcaaacattca-tattctagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgag 217  Q
    |||| ||           ||||||||||||||| ||||||||||| ||||||||||||||  ||||| ||||||||   ||||||||||  | |||| ||    
T  16701053 aattattctaatcacattgtaatcaaacattcaatattctagtgggagtccttggtggaggtgtttttcatcaagaagagtagacgtagaccaaagcaag 16701152  T
Q  218 gacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttaga 317  Q
    ||||||||  | |||||||||||||||||||||  | |||||||  |||||||||||| ||||||| | |||||||||||   ||||||| |||| | |     
T  16701153 gacgaaagagtaaactactataaatctcgatgttttatctcttctctatcctctttaattttgattaactgtgtatttga-aacttgatatattgatggt 16701251  T
Q  318 gtagaaactgagtgtgatctaggttta 344  Q
     |||||| | |||||||||||||||||    
T  16701252 atagaaattaagtgtgatctaggttta 16701278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 280 - 473
Target Start/End: Original strand, 26261057 - 26261262
Alignment:
Q  280 gattgattgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaatt----------agnnnnn 369  Q
    |||||||| ||||||| |||||||||||||||  ||||||| ||| |||||||||||||||||| |||  |||||||||||||          |          
T  26261057 gattgattatgtattttattgcttgataaatttctagagtaaaaattgagtgtgatctaggtttgtttcattaaacttgaatttcttctttgaattagct 26261156  T
Q  370 nnacctcacttgtcatagatcagacttggtttcaatctattgtcaatttgtc--acacatacacaattgtgttcattagtataattgattaattgccatt 467  Q
      | |||||||  ||||||||| |||||||||||||||||||||||||| ||  ||||  ||| ||||||||||||||| |||||| |||||||||  ||    
T  26261157 ttatctcactttacatagatcacacttggtttcaatctattgtcaatttatcaaacactaacataattgtgttcattagaataattaattaattgctctt 26261256  T
Q  468 aggttt 473  Q
    ||||||    
T  26261257 aggttt 26261262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 19527158 - 19527300
Alignment:
Q  3 gattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcat 102  Q
    |||||||||| |  ||||||||||||| | ||||||||||||||||||| ||| |||||||| |||||| | |||| |||| ||||||||||| || |||    
T  19527158 gattgaagagttcgaagggttgcacgggtaattgaggattcgaagacatcaaggagcaccaaattcaaagggtatttgaagtttgggggagtggttacat 19527257  T
Q  103 aggaattgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
    | |  ||||||||   || ||||||||||||| ||| |||||||    
T  19527258 a-gcgttgaagaactaggatagtttcaaggaactctcgtaatca 19527300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 24660764 - 24660857
Alignment:
Q  53 aagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
    |||||||||||| |||||| |||||| |||| ||||||||||| || ||||||| ||||||||   || ||||||||||||| |||||||||||    
T  24660764 aagaagcaccaaattcaaaggttatttgaagtttgggggagtgcttacataggagttgaagaactaggatagtttcaaggaactcttgtaatca 24660857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 146
Target Start/End: Complemental strand, 24511267 - 24511127
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||||||| |||||||||| || |  |||||||||||||||||| |||||||||||| |||||| |  ||| |||| ||  ||||||| || ||||||    
T  24511267 tgaagagcttgaagggttgcatgggtacttgaggattcgaagacatcaagaagcaccaaattcaaaaggcatttgaagtttaagggagtggttacatagg 24511168  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
      ||||||||   || |||||| |||||| |||||||||||    
T  24511167 ggttgaagaactaggatagtttaaaggaactcttgtaatca 24511127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 25917161 - 25916877
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||  ||||| | || |||||| |||| || |||| |  || |||||     
T  25917161 aagggttgcacgggtgattgaggattcgaagacatcaagaagcaacaaattcaaagcttatttggagtttggggaagtgcttacatatgggttaaagaac 25917062  T
Q  117 cggggtagtttcaaggaattcttgtaatcaaa----cattca-tattct-------agtggaagtccttggtggagacgttttccatcaaga---gtaga 201  Q
      || ||||||| ||||| ||||| ||||| |    |||||| |||| |       |||||| | ||||||||||| |||||| || |||||   |||||    
T  25917061 taggatagtttcgaggaactcttgaaatcacatttgcattcaatattgttactattagtggatgaccttggtggaggcgtttttcaccaagaagagtaga 25916962  T
Q  202 cgtagctcgaagcgaggacgaaaggttgaactactat--aaatctcgatgtcgtt-tctctt-ccttatcctctttaactttgat 282  Q
    |||||| ||||| |||||||||||| |||||||||||  |||||| | ||||||| ||| || ||||||||||||||| ||||||    
T  25916961 cgtagcccgaagtgaggacgaaagggtgaactactattaaaatcttggtgtcgttctcttttcccttatcctctttaattttgat 25916877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 399 - 483
Target Start/End: Complemental strand, 27735627 - 27735541
Alignment:
Q  399 tttcaatctattgtcaatttgtcacaca--tacacaattgtgttcattagtataattgattaattgccattaggtttcgtttaagat 483  Q
    ||||||||||||| |||||| ||| |||  ||||||||||||||||||||||||||||||||||| |  |||||||| |||| ||||    
T  27735627 tttcaatctattgacaatttatcaaacacttacacaattgtgttcattagtataattgattaattactcttaggtttggtttgagat 27735541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 18958525 - 18958653
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactat--aaatctcgatgtcgtt 254  Q
    ||||| ||||||||||||||| |||||| || |||||   ||||||||||||||||| |||||||||||   ||| ||||||  |||||| | |||| ||    
T  18958525 tagtgtaagtccttggtggaggcgtttttcaccaagaaaagtagacgtagctcgaagtgaggacgaaagagagaaatactataaaaatctaggtgtcttt 18958624  T
Q  255 -tctcttccttatcctctttaactttgat 282  Q
     | ||||||||||||||||||| ||||||    
T  18958625 atatcttccttatcctctttaattttgat 18958653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 20057354 - 20057291
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaa 70  Q
    |||||||||||||| ||||| || ||||||||||||||||||| | ||||| ||||||||||||    
T  20057354 gaagagcttcaaggattgcatgggtgattgaggattcgaagacttgaagaaacaccaatttcaa 20057291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 460
Target Start/End: Complemental strand, 29830970 - 29830892
Alignment:
Q  383 catagatcagacttggtttcaatctattgtcaatttgtc--acacatacacaattgtgttcattagtataattgattaat 460  Q
    ||||||||| | |||||||||||||||||||||||| ||  ||||||| || |||||||||| ||||||||||| |||||    
T  29830970 catagatcacaattggtttcaatctattgtcaatttatccaacacatatac-attgtgttcactagtataattgtttaat 29830892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 7 - 94
Target Start/End: Original strand, 18958360 - 18958446
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagt 94  Q
    ||||||||| ||||| ||||||| |  || ||||||||||||||| |||||||||||| |||||| |||||| |||| || |||||||    
T  18958360 gaagagcttgaaggggtgcacgggtactt-aggattcgaagacatcaagaagcaccaaattcaaaggttatttgaagtttaggggagt 18958446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 19527329 - 19527410
Alignment:
Q  163 tggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    |||||||||||| ||||| |||||| || |||||   |||| |||||| ||||||||| |||||||| ||||||||||||||    
T  19527329 tggaagtccttgatggaggcgtttttcaccaagaagagtaggcgtagcccgaagcgagaacgaaagggtgaactactataaa 19527410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 20972372 - 20972420
Alignment:
Q  193 aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||||||    
T  20972372 aagagtagacgtagcctgaagcgaggacaaaagggtgaactactataaa 20972420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 24129523 - 24129577
Alignment:
Q  51 ttaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    ||||| |||||||| |||||| |||||| |||| ||||||||||| |||||||||    
T  24129523 ttaaggagcaccaaattcaaaggttatttgaagtttgggggagtgtttgcatagg 24129577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 26310 - 25938
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| |||||||||||| |||| ||||||||||||| ||||||| |||||||||| |||||||| |||||| ||||||||| |||||||||||    
T  26310 tcgagtgaagaacttcaagggttgaacgggtgattgaggattcaaagacatcaagaagcaccgatttcaaaggttatttgaagattggtggagtgattgc 26211  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattct-----------tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttcc 189  Q
    ||| |||| ||||||   ||||||||||||||| ||||           |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26210 ataagaatggaagaactagggtagtttcaaggagttctagtaatcacattgtaatcaaacattcatattctagtggaagtccttggtggagacattttcc 26111  T
Q  190 atc---aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgat 286  Q
    |||   ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||  |||| |||||||||  ||||||||||||   ||||| ||    
T  26110 atcaagaagagtagacgtagcccgaagcgaggacgaaagggcgaaccactataaatctcagtgtcttttctcttctctatcctctttaa---tgattaat 26014  T
Q  287 tgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaatt 362  Q
    |||||||||||||||||||||| ||  ||| ||||||| |||||||||||||||||||    ||||||||||||||    
T  26013 tgtgtatttgattgcttgataagtttctagtgtagaaattgagtgtgatctaggtttaaaccgttaaacttgaatt 25938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 444
Target Start/End: Complemental strand, 25905 - 25843
Alignment:
Q  384 atagatcagacttggtttcaatctattgtcaatttgtcacaca--tacacaattgtgttcatt 444  Q
    |||||||| |||| |||||||||| |||||||||| ||| |||  ||||||||||||||||||    
T  25905 atagatcacacttagtttcaatctgttgtcaatttatcaaacagttacacaattgtgttcatt 25843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 3e-74; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 6 - 345
Target Start/End: Complemental strand, 20323912 - 20323559
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    ||||||||||||||||||||||    |||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||||||||||||| |||||    
T  20323912 tgaagagcttcaagggttgcacaagagattgaggattcgaagacatcaagaagcaccaattgcaaaggttatttgaagattgggggagtgattgtatagg 20323813  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaatca-----------aacattcatattctagtggaagtccttggtggagacgttttccatcaa 194  Q
    ||||||| ||    |||||||||||||||||||||||||||           |||||| ||||||||||||||||||||||||| ||  |||||||||||    
T  20323812 aattgaaaaactaaggtagtttcaaggaattcttgtaatcacattgtaataaaacattaatattctagtggaagtccttggtggggaaattttccatcaa 20323713  T
Q  195 ga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgt 291  Q
    ||   ||||| |||||  ||||| || | |||||   |||||||||||||||||  |||| | ||||||| ||||||| ||||| ||||||||||| |||    
T  20323712 gaagagtagaagtagcctgaagcaagaaagaaagagcgaactactataaatctcagtgtcttctctcttctttatcctatttaattttgattgattttgt 20323613  T
Q  292 atttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttat 345  Q
    |||||||||||||||||||||  || ||||||| |||||||||| |||||||||    
T  20323612 atttgattgcttgataaattgccagtgtagaaattgagtgtgatataggtttat 20323559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 363
Target Start/End: Original strand, 16661330 - 16661697
Alignment:
Q  8 aagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaa 107  Q
    |||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||| | |||| || ||||||||||||| |||||||| ||    
T  16661330 aagagcttcaagggttgcacgggtgtttgaggattcgaatacatcaagaagcaccaatttcaaaggatatttgatgattgggggagtggttgcatagtaa 16661429  T
Q  108 ttgaagaatcggggtagtttcaaggaattc-----------ttgtaatcaaacattcatattctagtggaagtccttggtggagacgtttt---ccatca 193  Q
    |||||||    ||||||||| |||||||||           |||||||||||||||||||||||||||||||||| |||||||||||||||   |||  |    
T  16661430 ttgaagagctagggtagtttgaaggaattcttgtaatcacattgtaatcaaacattcatattctagtggaagtccgtggtggagacgttttgcaccaaaa 16661529  T
Q  194 agagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtat 293  Q
    | |||||||||||| |||| |||||||||||||  |||| ||||||||||||| |||||||||||| || | |||||||||| |||| || ||| |||||    
T  16661530 aaagtagacgtagcccgaaacgaggacgaaagggggaac-actataaatctcggtgtcgtttctctgccctttcctctttaattttg-ttaattatgtat 16661627  T
Q  294 ttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttgaatta 363  Q
     |   || |||||||||||||||| || ||| ||| |||||||| | || |  ||||||||||| |||||    
T  16661628 atccatgtttgataaattgttagaatataaattgaatgtgatcttgtttcaacttgttaaacttaaatta 16661697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 39 - 344
Target Start/End: Complemental strand, 13524148 - 13523830
Alignment:
Q  39 gattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattct 138  Q
    ||||||||||||| ||||||||||||||||||| | | || ||| |||||||||||||||||||| |||||||| ||   ||||||||||||||||||||    
T  13524148 gattcgaagacatcaagaagcaccaatttcaaaaggtttt-gaaaattgggggagtgattgcataagaattgaataactagggtagtttcaaggaattct 13524050  T
Q  139 tgt-----------aatcaaacattca-tattctagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcgaggacgaa 223  Q
    |||           ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||   ||||||||||| | |||| | ||||||    
T  13524049 tgtcatcacattgtaatcaaacattcaatattctagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaa 13523950  T
Q  224 aggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaa 323  Q
    ||| ||||||||||||||||||| |||  | |||||||   ||||||||||| |||| || |||||||||||||  ||||||||||||| ||| |  |||    
T  13523949 agggtgaactactataaatctcggtgttttctctcttctcaatcctctttaattttgcttaattgtgtatttga-agcttgataaattgatagtgatgaa 13523851  T
Q  324 actgagtgtgatctaggttta 344  Q
    | | |||||| ||||||||||    
T  13523850 attaagtgtggtctaggttta 13523830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 11554474 - 11554335
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 106  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| | ||||  ||| |  |||||||| || ||||||     
T  11554474 gaagagcttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcaccaaattcaaagggtattttaagttgtggggagtggttacataggg 11554375  T
Q  107 attgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
     |||||||| | ||||||||| |||||| |||||||||||    
T  11554374 gttgaagaaccagggtagttttaaggaactcttgtaatca 11554335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 15782810 - 15783093
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||||||||||| | |||||||||||||| |||| |||| ||||||| || ||| |||||| |||| ||||||||||| || ||||||  ||||||||     
T  15782810 aagggttgcacgggtaattgaggattcgaaaacatcaagatgcaccaaattaaaaggttatttgaagtttgggggagtgcttacataggggttgaagaac 15782909  T
Q  117 cggggtagtttcaaggaattcttgtaatc-----------aaacattcata-ttctagtggaagtccttggtggagacgtttt--ccatcaagagtagac 202  Q
      || ||||||||||||| ||||||||||           |||||||  || |  |||||||||||||||||||||  |||||  |||  |||||||||     
T  15782910 taggatagtttcaaggaactcttgtaatcacatttgtattaaacattgttactaatagtggaagtccttggtggaggtgttttcaccaagaagagtagat 15783009  T
Q  203 gtagctcgaagcgaggacgaaaggttgaactactat--aaatctcgatgtcgtttctctt---ccttatcctctttaactttgat 282  Q
    |||||||||||||||||||||||   ||||||||||  |||||||| |||| ||||||||   ||||||||||||||| ||||||    
T  15783010 gtagctcgaagcgaggacgaaagagcgaactactataaaaatctcggtgtc-tttctcttttcccttatcctctttaattttgat 15783093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 374 - 483
Target Start/End: Complemental strand, 20323520 - 20323409
Alignment:
Q  374 ctcacttgtcatagatcagacttggtttcaatctattgtcaatttgtcacaca--tacacaattgtgttcattagtataattgattaattgccattaggt 471  Q
    |||||||  ||||||||| |||| | ||||||||||  ||||||| ||| |||  |||| ||||||||| ||||||||||||||||||||||  ||||||    
T  20323520 ctcactttacatagatcacacttaggttcaatctatcatcaatttatcaaacacttacataattgtgttaattagtataattgattaattgctcttaggt 20323421  T
Q  472 ttcgtttaagat 483  Q
    || |||| ||||    
T  20323420 ttggtttgagat 20323409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 143
Target Start/End: Complemental strand, 27919785 - 27919698
Alignment:
Q  57 agcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaa-tcggggtagtttcaaggaattcttgtaa 143  Q
    |||||||| |||||| |||||| |||| ||||||||||| |||||||||  |||||||| | ||  || |||||||||||||||||||    
T  27919785 agcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaattaggtttaatttcaaggaattcttgtaa 27919698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 70532 - 70877
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| |||||||| |||||||| | | ||| ||||||||||||| |||||||| |||||| ||| | | || |||||||||||||||||||||    
T  70532 tcgagtgaagaacttcaaggattgcacgggtaactgaagattcgaagacatcaagaagcatcaattttaaaaggtttt-gaagattgggggagtgattgc 70630  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatcaaacattc-atattctagtggaagtccttggtggagacgttttccatc---aaga 196  Q
    ||||||||||||||| | |||||||||||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||||||| ||   ||||    
T  70631 ataggaattgaagaaccagggtagtttcaaagaattgttgtaagcaaacattcaatattctagtggaagtccttggtggaggcgttttccttcaagaaga 70730  T
Q  197 gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttg 296  Q
    ||| ||||||| ||| | |||||||||||| ||||||||||||||||||| |||  | ||||||   || ||||||||| ||||||| ||| ||||||||    
T  70731 gtatacgtagcccgaggtgaggacgaaagggtgaactactataaatctcggtgttttctctcttgtctagcctctttaattttgattaattctgtatttg 70830  T
Q  297 attgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
    |  ||||||||||||| ||| || | || | |||||||||||||||||    
T  70831 a-agcttgataaattgatagtgttggaattaagtgtgatctaggttta 70877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 460
Target Start/End: Original strand, 70961 - 70994
Alignment:
Q  427 tacacaattgtgttcattagtataattgattaat 460  Q
    |||||||||||||| |||||||||||||||||||    
T  70961 tacacaattgtgttaattagtataattgattaat 70994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 6308 - 6665
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| ||||||||||||||||| ||||||| ||||||||||||| ||||| ||||||||||||| ||||||  || ||||||| |||||||||    
T  6308 tcgagtgaagaacttcaagggttgcacgggtgattgaagattcgaagacatcaagaaacaccaatttcaaaggttatttaaatattggggtagtgattgc 6407  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatc-----------aaacattca-tattctagtggaagtccttggtggagacgttttc 188  Q
    |||||||||||||||   |||||||| ||||||||||||||||||           ||||||||| ||||||||||||||| ||||||||||||||||||    
T  6408 ataggaattgaagaactagggtagttccaaggaattcttgtaatcacattgtaataaaacattcattattctagtggaagttcttggtggagacgttttc 6507  T
Q  189 catc---aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattga 285  Q
    ||||   |||||| || ||||||||||| |||||||||||   |||| ||||||||||||| |  | | ||||||   |||||||||||| ||||||| |    
T  6508 catcaagaagagtggaggtagctcgaagtgaggacgaaagaacgaaccactataaatctcggtaccctatctcttttctatcctctttaattttgattaa 6607  T
Q  286 ttgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
     ||||||||||| | ||||||||||| ||||  |||| | |||||||||||||||||||    
T  6608 ctgtgtatttgaat-cttgataaatttttagtatagagattgagtgtgatctaggttta 6665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 4e-64; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 84 - 359
Target Start/End: Complemental strand, 24454627 - 24454350
Alignment:
Q  84 attgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaatcaaacattcatattctagtggaagtccttggtggagacg 183  Q
    |||||||||||||||| |||||||||||||||   ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||| |     
T  24454627 attgggggagtgattgtataggaattgaagaactagggtagtttcaaggaattcctgtaatcaaacattcgaattctagtggatgtccttggtggaggca 24454528  T
Q  184 ttttccatc---aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttg 280  Q
    |||| ||||   ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||  | |||||||  |||||||||||| ||||    
T  24454527 ttttgcatcaagaagagtagacgtagcccgaagcgaagacgaaagggtgaactactataaatctcggtgttctctctcttctctatcctctttaattttg 24454428  T
Q  281 attgattgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggtttattttgttaaacttga 359  Q
    ||| |||||||||||||  |||| | ||||||  || ||||||| | ||||||||||||||||| | | ||||||||||    
T  24454427 attaattgtgtatttga-agctttaaaaattgaaagtgtagaaattaagtgtgatctaggtttaatcttttaaacttga 24454350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 139 - 463
Target Start/End: Original strand, 25930969 - 25931301
Alignment:
Q  139 tgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccatc---aagagtagacgtagctcgaagcgaggacgaaaggttgaactac 235  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||   ||||||||||||||  |||||| |||||||||||  |||||||    
T  25930969 tgtaatcaaacattcatattctagtggaagtccttggtggagtcattttccatcaagaagagtagacgtaggccgaagcaaggacgaaagggcgaactac 25931068  T
Q  236 tataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgat 335  Q
    |||||||||   ||||  |||||     |||||| ||||| || |||| ||||||||||| ||||||||||||||||  || ||||||| | |  |||||    
T  25931069 tataaatcttagtgtc--ttctc-----tatcctttttaatttcgattaattgtgtatttcattgcttgataaattgcaagcgtagaaattaacagtgat 25931161  T
Q  336 ctaggtttattttgttaaacttgaatt----------agnnnnnnnacctcacttgtcatagatcagacttggtttcaatctattgtcaatttgtc--ac 423  Q
     || ||||||| | |||||||||||||          |        | |||||||   |||||||| |||| |||||||||||||||| |||| ||  ||    
T  25931162 ttaagtttattctattaaacttgaatttgttctttgaattagctttatctcactttatatagatcacacttagtttcaatctattgtctatttatcaaac 25931261  T
Q  424 acatacacaattgtgttcattagtataattgattaattgc 463  Q
    || |||||||||||||||||||||||||||||||||||||    
T  25931262 acttacacaattgtgttcattagtataattgattaattgc 25931301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 25929578 - 25929700
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| | | |||||| | |||| ||| |||||||||||||||||||| |    
T  25929578 tgaaaagcttcatgggttgcacggatgattgaggattcgaagacatcaagaagcatcgagttcaaagggtatttgaaaattgggggagtgattgcatatg 25929677  T
Q  106 aattgaagaatcggggtagtttc 128  Q
    ||||||||||   ||||||||||    
T  25929678 aattgaagaactagggtagtttc 25929700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 16598661 - 16598793
Alignment:
Q  62 caatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattc-----------ttgtaatcaaaca 150  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||            ||||||||||||    
T  16598661 caatttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactagggtcgtttcaaggaattcatgtaatcacagtgtaatcaaaca 16598760  T
Q  151 ttcatattctagtggaagtccttggtggagacg 183  Q
    || ||||||||||||||||||||||||||||||    
T  16598761 ttaatattctagtggaagtccttggtggagacg 16598793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 22728333 - 22728228
Alignment:
Q  8 aagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattggggg-agtgattgcatagga 106  Q
    ||||||||||||| || || || ||||||||||||||||||| |  |||| ||||||||||||| |||| | ||| ||||||||  ||| ||||||| ||    
T  22728333 aagagcttcaaggattccatgggtgattgaggattcgaagacttggagaatcaccaatttcaaaggttacttgaaaattgggggttgtggttgcatatga 22728234  T
Q  107 attgaa 112  Q
    ||||||    
T  22728233 attgaa 22728228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 24005609 - 24005508
Alignment:
Q  11 agcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattg 110  Q
    |||||||||| |||||| | ||||||||||||| ||||| | ||||| ||||||||||||  | || | ||||||| ||| | || ||||||||||||||    
T  24005609 agcttcaaggattgcacaggtgattgaggattcaaagacttgaagaaacaccaatttcaaggggtacttgaagatttgggtaatggttgcataggaattg 24005510  T
Q  111 aa 112  Q
    ||    
T  24005509 aa 24005508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 18565166 - 18565231
Alignment:
Q  51 ttaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||| |||| ||| || |||||||||| |||| ||||||||||| ||||||||| ||||||||||    
T  18565166 ttaaggagcatcaaattaaaatgttatttgaagtttgggggagtgtttgcatagggattgaagaat 18565231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 22728134 - 22728068
Alignment:
Q  193 aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctct 259  Q
    ||||||||| ||| | |||||||| || ||||||  || ||||||||||||||||||| ||||||||    
T  22728134 aagagtagatgtaccccgaagcgaagaggaaagggggagctactataaatctcgatgttgtttctct 22728068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 20403368 - 20403417
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaagagtagacgtagctc 209  Q
    ||||||| | ||||||||||| |||||| || ||||||||||||||||||    
T  20403368 tagtggatgaccttggtggaggcgtttttcaccaagagtagacgtagctc 20403417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Complemental strand, 24454324 - 24454284
Alignment:
Q  422 acacatacacaattgtgttcattagtataattgattaattg 462  Q
    |||| |||||||||||||| |||||||| ||||||||||||    
T  24454324 acacctacacaattgtgttaattagtatcattgattaattg 24454284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 39639 - 39295
Alignment:
Q  13 cttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaa 112  Q
    ||||| ||||||||||  | ||||| ||||||||||||| || ||| |||||||||| | |||||| |||||||| ||||||||||||||||||||||||    
T  39639 cttcatgggttgcacgagttattgaagattcgaagacatcaaaaagtaccaatttcagaggttatttgaagattgagggagtgattgcataggaattgaa 39540  T
Q  113 gaatcggggtagtttcaaggaattcttgtaatca-----------aacattcatattctagtggaagtccttggtggagacgttttccatc---aagagt 198  Q
    |||   |||| ||||||||||||| ||||| |||           |||||| |||| ||||||||||||| | ||||||| ||||||||||   ||||||    
T  39539 gaaatagggttgtttcaaggaattattgtattcacattgtaagcaaacattaatatcctagtggaagtccctcgtggagatgttttccatctagaagagt 39440  T
Q  199 agacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgat 298  Q
    ||| ||||| ||||| || ||| ||||| |||||||||||||||||||||||| | |||||||  |||||||||||| ||||||| |||||||||||||     
T  39439 agatgtagcccgaagagaagacaaaagggtgaactactataaatctcgatgtcttctctcttctctatcctctttaattttgattaattgtgtatttga- 39341  T
Q  299 tgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
     | | ||||||||||||| ||||| | ||||| |||| ||||||||    
T  39340 aggtggataaattgttagtgtagagattgagtatgatataggttta 39295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 80 - 344
Target Start/End: Complemental strand, 35258 - 34980
Alignment:
Q  80 gaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaatca-----------aacattca-tattctagtggaa 167  Q
    |||||||||||||||||||  |||||||||||||||   |||||||||||||| |||||||||||||           |||||| | ||||||| |||||    
T  35258 gaagattgggggagtgattagataggaattgaagaactagggtagtttcaagggattcttgtaatcacattcaaatcaaacatttaatattctaatggaa 35159  T
Q  168 gtccttggtggagacgttttccatcaagag---tagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttcctt 264  Q
    ||||||||||||| | |||||||||| |||   |||||||||| |||||| |||| || ||| ||||||||||||||||||| |||  | |||||||  |    
T  35158 gtccttggtggaggcattttccatcaggaggagtagacgtagcccgaagcaaggatgacagggtgaactactataaatctcggtgttttctctcttctct 35059  T
Q  265 atcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
    ||||||||||| |||| || | |||||||||||  ||||||||||||| |||  || ||| | |||||||||||||||||    
T  35058 atcctctttaattttgtttaactgtgtatttga-agcttgataaattgatagtataaaaattaagtgtgatctaggttta 34980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 39189 - 39148
Alignment:
Q  437 tgttcattagtataattgattaattgccattaggtttcgttt 478  Q
    |||||||||||||||||||||||||||  |||||||| ||||    
T  39189 tgttcattagtataattgattaattgctcttaggtttggttt 39148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 552 - 907
Alignment:
Q  1 tcgattgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgc 100  Q
    |||| |||||| ||||||||||||||||  | ||||| ||||||||||||| ||||||||| ||||||||| | | |  ||||||| |||||||||||||    
T  552 tcgactgaagaacttcaagggttgcacgagtaattgaagattcgaagacatcaagaagcacgaatttcaaaaggttt--gaagattcggggagtgattgc 649  T
Q  101 ataggaattgaagaatcggggtagtttcaaggaattcttgtaatca-----------aacattca-tattctagtggaagtccttggtggagacgttttc 188  Q
    ||||||| |||||||    |||||||||||||||||||||||||||           |||||||| |||||||||||||||||||||||||  |||||||    
T  650 ataggaactgaagaactaaggtagtttcaaggaattcttgtaatcacacggtaatcaaacattcaatattctagtggaagtccttggtggatgcgttttc 749  T
Q  189 catcaaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattga 285  Q
    ||||||||   |||||||||||||||||  |||||| |||| ||||||||||||||||| | |||  | ||||||| ||||||||||||| |||| || |    
T  750 catcaagaagagtagacgtagctcgaagtaaggacggaagggtgaactactataaatcttggtgttttctctcttctttatcctctttaattttgtttaa 849  T
Q  286 ttgtgtatttgattgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
    || ||||| |||  ||||||||| ||| ||| ||||||| | |  ||||||||||||||    
T  850 ttatgtatatga-agcttgataagttgatagtgtagaaattaatagtgatctaggttta 907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 8e-53; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 24374970 - 24374696
Alignment:
Q  4 attgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcata 103  Q
    ||||||||||||||||| ||||| |||||||| | ||||||||||| |  |||| ||||||||||||  |||| | |||||||| |||||||||| | |     
T  24374970 attgaagagcttcaaggattgcatggatgattcaagattcgaagacttggagaaacaccaatttcaagggttacttgaagattgagggagtgattacgtt 24374871  T
Q  104 ggaattgaagaatcggggtagtttcaaggaattcttgtaatcaaacattcatattctagtggaagtccttggtggagacgtttt---ccatcaagagtag 200  Q
    |||||||||||||  | ||||||| ||||||||| |||||||| ||||||| ||| ||||||||||||||||||| ||||||||   |||  ||||||||    
T  24374870 ggaattgaagaattagagtagtttaaaggaattcatgtaatcatacattca-attttagtggaagtccttggtggtgacgtttttcaccaaaaagagtag 24374772  T
Q  201 acgtagctcgaagcgaggacgaaaggttgaactactat-aaatctcgatgtcgtttctcttccttatcctctttaa 275  Q
    ||||| | ||||| ||||||||||||  |||||||||| |||||||| |||||||||||| || | ||||||||||    
T  24374771 acgtaccccgaagggaggacgaaagggagaactactataaaatctcggtgtcgtttctctcccctttcctctttaa 24374696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 47 - 344
Target Start/End: Complemental strand, 16647977 - 16647667
Alignment:
Q  47 gacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaa--- 143  Q
    ||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||       
T  16647977 gacatcaagaagcaccaatttcaaaggttatttgaagattgggggagtgattgcataggaattgaagaactgggctagtttcaaggaatttttgtaatca 16647878  T
Q  144 --------tcaaacattc-atattctagtggaagtccttggtggagacgttttccatc---aagagtagacgtagctcgaagcgaggacgaaaggttgaa 231  Q
            |||||||||| ||||| || |||||||||||||||||||| |||||||||   |||||| || |||||||||||||||||||||||    ||    
T  16647877 cattgtattcaaacattcaatattttattggaagtccttggtggagacattttccatcaagaagagtggaggtagctcgaagcgaggacgaaagagcaaa 16647778  T
Q  232 ctactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttgattgcttgataaattgttagagtagaaactgagtg 331  Q
    | |||||||||||   |||| | |||||||  |||||| ||||| ||||||| |||| ||||||||  | ||||||||||| ||| ||||||| |  |||    
T  16647777 ccactataaatctttgtgtcttctctcttctctatcct-tttaattttgattaattgcgtatttga-aggttgataaattgctagtgtagaaattaggtg 16647680  T
Q  332 tgatctaggttta 344  Q
    || ||||||||||    
T  16647679 tggtctaggttta 16647667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 22741574 - 22741679
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 106  Q
    |||| ||||||||| |||||  | ||||||| ||||||||||| | ||||| ||||||||||||| | |||| |||||||||||   || |||||| |||    
T  22741574 gaagggcttcaaggattgcataggtgattgaagattcgaagacttaaagaaacaccaatttcaaagggtatttgaagattggggttatggttgcatggga 22741673  T
Q  107 attgaa 112  Q
    ||||||    
T  22741674 attgaa 22741679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 159 - 275
Target Start/End: Complemental strand, 17125308 - 17125186
Alignment:
Q  159 ctagtggaagtccttggtggagacgtttt---ccatcaagagtagacgtagctcgaagcgaggacgaaaggttgaactac--tataaatctcgatgtcgt 253  Q
    |||||||| | ||||| ||||| ||||||   |||| |||||| ||| |||| |||||||||||||||||| ||||| ||  || |||| ||| ||||||    
T  17125308 ctagtggatgaccttgatggaggcgtttttcaccatgaagagttgacatagcccgaagcgaggacgaaagggtgaacaactttaaaaatgtcggtgtcgt 17125209  T
Q  254 t-tctcttccttatcctctttaa 275  Q
    | ||| |||||||||||||||||    
T  17125208 tctcttttccttatcctctttaa 17125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 7e-44; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 14889583 - 14889239
Alignment:
Q  13 cttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaa 112  Q
    ||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| | | | || | |||||||  || |||||||||||||||||||||    
T  14889583 cttcaagggttgcacgggtaattgaagattcgaagacatcaagaagcaccaattttagagggtagttgaagattatgg-agtgattgcataggaattgaa 14889485  T
Q  113 gaatcggggtagtttcaaggaattcttgtaatca-----------aacattc-atattctagtggaagtccttggtggagacgttttccatcaaga---g 197  Q
    |||    |||||||||||||||||||||||||||           ||||||| |||||||| | ||||| ||| ||||||  ||||||||||||||   |    
T  14889484 gaactaaggtagtttcaaggaattcttgtaatcacgttgtattcaaacattctatattctattagaagttcttagtggaggtgttttccatcaagaagag 14889385  T
Q  198 tagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgattgattgtgtatttga 297  Q
    | || ||||||||||||||||||||||   ||||| | ||||||||||| |||| | |||||||  |||||| ||||| ||| ||| |||||||||||||    
T  14889384 tggaggtagctcgaagcgaggacgaaatagtgaaccattataaatctcggtgtcttctctcttctctatcctttttaattttaattaattgtgtatttga 14889285  T
Q  298 ttgcttgataaattgttagagtagaaactgagtgtgatctaggttta 344  Q
       |||||||||||| ||| ||||||| |  ||||||||||||||||    
T  14889284 -aacttgataaattgatagtgtagaaattaggtgtgatctaggttta 14889239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 282
Target Start/End: Complemental strand, 42369102 - 42368837
Alignment:
Q  31 tgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaa 130  Q
    |||||||| |||||||||||  ||||||||| || |||||| | |||| |||| ||||||||||| ||  ||| |  ||||||||   |||||| |||||    
T  42369102 tgattgagaattcgaagacaacaagaagcacaaaattcaaagggtatttgaagtttgggggagtgtttatataagggttgaagaactagggtagcttcaa 42369003  T
Q  131 ggaattcttgtaatca-----------aacattcatattctagtggaagtccttggtggagacgttttccatcaaga---gtagacgtagctcgaagcga 216  Q
    |||| |||||||||||           |||||||||||| ||||| |||||||||| ||||  |||||||| |||||   ||||| ||| | ||||||||    
T  42369002 ggaactcttgtaatcacattgtaattcaacattcatattttagtgaaagtccttggcggaggagttttccaccaagaagagtagatgtatcccgaagcga 42368903  T
Q  217 ggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttgat 282  Q
    |||| ||||| |||||||||||||||||   | |||||||||||||||||||||||||| ||||||    
T  42368902 ggacaaaagggtgaactactataaatctttgtatcgtttctcttccttatcctctttaattttgat 42368837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 24698009 - 24697870
Alignment:
Q  7 gaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagga 106  Q
    ||||||||| |||||||||| || ||||||| ||||||||||||| |||||||||||| |||||| | |||| |||| ||||||||||| || ||||||     
T  24698009 gaagagcttgaagggttgcatgggtgattgacgattcgaagacatcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttacataggg 24697910  T
Q  107 attgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
     ||||||||   |||||||||||||||| |||||||||||    
T  24697909 gttgaagaactagggtagtttcaaggaactcttgtaatca 24697870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 25921962 - 25922256
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    ||||||| || ||||||||||||| |||||||| |||| ||||||| |||||||||||| |||||| |||||| |||| ||| ||||||| ||  |||||    
T  25921962 tgaagagtttgaagggttgcacgggtgattgagcattcaaagacatcaagaagcaccaaattcaaaggttatttgaagtttgagggagtggttttatagg 25922061  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaatca-----------aacattcata-ttctagtggaagtccttggtggagacgtttt---cca 190  Q
      ||||||||   |  ||||||||||||| |||||||||||           ||||||  || |  ||||||||||||||||||||| ||||||   |||    
T  25922062 ggttgaagaactagaatagtttcaaggaactcttgtaatcacatttgtattcaacattgttactattagtggaagtccttggtggaggcgttttacacca 25922161  T
Q  191 tcaagagtagacgtagctcgaagcgaggacgaaaggttgaactactat-aaatctcgatgtcgtt-tctctt-ccttatcctctttaactttgat 282  Q
      ||||||||||||||| |||||||||||| ||||| |||||| |||| |||||||| || |||| ||| || ||||||||||||||| ||||||    
T  25922162 agaagagtagacgtagcccgaagcgaggacaaaagggtgaactgctataaaatctcggtgccgttctcttttcccttatcctctttaattttgat 25922256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 6 - 282
Target Start/End: Original strand, 24507747 - 24508042
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||||||| |||| |||||||| |   ||||||||| ||||||| |||||||||||| |||||| | |||| |||| ||| ||||||| || ||||||    
T  24507747 tgaagagcttgaaggattgcacgggtatctgaggattcaaagacatcaagaagcaccaaattcaaagggtatttgaagtttgagggagtggttacatagg 24507846  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaatca------------aacattcata-ttctagtggaagtccttggtggagacgttttccatc 192  Q
      |||||||| | || |||||| |||||| |||||||||||            ||||||  || |  ||||||||||||||||||||   ||||| ||||    
T  24507847 ggttgaagaaccaggatagttttaaggaactcttgtaatcacatttgtaattcaacattgttactattagtggaagtccttggtggaagtgtttttcatc 24507946  T
Q  193 aaga---gtagacgtagctcgaagcgaggacgaaaggttgaactactat--aaatctcgatgtcgtt-tctcttccttatcctctttaactttgat 282  Q
    ||||   ||||||||||| |||| |||||||||||||  ||||||||||  |||||||| ||| ||| | | ||||||||||||||||| ||||||    
T  24507947 aagaagtgtagacgtagcccgaaacgaggacgaaagggcgaactactataaaaatctcggtgttgttctattttccttatcctctttaattttgat 24508042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 385 - 478
Target Start/End: Original strand, 7654125 - 7654220
Alignment:
Q  385 tagatcagacttggtttcaatctattgtcaatttgtcacacat--acacaattgtgttcattagtataattgattaattgccattaggtttcgttt 478  Q
    ||||||| |||| ||||||||||||||| ||||| ||| ||||  ||||||||||||||||||||||||||||||||||||  |||||||| ||||    
T  7654125 tagatcacacttagtttcaatctattgtgaatttatcaaacatttacacaattgtgttcattagtataattgattaattgctcttaggtttggttt 7654220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 6 - 112
Target Start/End: Complemental strand, 15486106 - 15485999
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattggggg-agtgattgcatag 104  Q
    ||||||||||||||| ||||| || || |||||||||||||||| |  |||| ||||||||||||  |||| | ||||||||||||  ||| ||||||||    
T  15486106 tgaagagcttcaaggattgcatgggtgtttgaggattcgaagacctggagaatcaccaatttcaagggttacttgaagattgggggttgtggttgcatag 15486007  T
Q  105 gaattgaa 112  Q
    ||||||||    
T  15486006 gaattgaa 15485999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 193 - 280
Target Start/End: Original strand, 12755272 - 12755359
Alignment:
Q  193 aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgtcgtttctcttccttatcctctttaactttg 280  Q
    |||||||||| || |  ||||||||||||||| |  |||||||||||||||| | ||||||||||||||| | |||||||| ||||||    
T  12755272 aagagtagacataccatgaagcgaggacgaaaagaggaactactataaatcttgttgtcgtttctcttccctttcctcttttactttg 12755359  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 1343681 - 1343552
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    |||||||| | || ||||||||||||  ||||||| |||||||||||| |||||| |||||| |||  ||| ||||||| || ||||| | ||||||||     
T  1343681 aagggttgtatgggtgattgaggatttaaagacatcaagaagcaccaaattcaaaggttatttgaattttgtgggagtgtttacatagaagttgaagaac 1343582  T
Q  117 cggggtagtttcaaggaattcttgtaatca 146  Q
       | |||||| |||||| |||||||||||    
T  1343581 taagatagttttaaggaactcttgtaatca 1343552  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 241
Target Start/End: Original strand, 16974139 - 16974220
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    ||||||||||||| ||| ||| | |||| || |||||||||| ||||| |||||| ||||||||||| ||||||| ||||||    
T  16974139 tagtggaagtcctcggtcgaggcatttttcaccaagagtagatgtagcccgaagcaaggacgaaagggtgaactaatataaa 16974220  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 13885779 - 13885838
Alignment:
Q  57 agcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    |||||||| |||||| |||||| |||| ||||||||||| |||||||||  |||||||||    
T  13885779 agcaccaaattcaaaggttatttgaagtttgggggagtgtttgcataggggttgaagaat 13885838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 22684086 - 22683886
Alignment:
Q  8 aagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaa 107  Q
    |||| ||||||||||||||| | ||||||| ||||||||||||| ||||||||| ||||||||| |||||| |||||||||||| || ||| ||||||||    
T  22684086 aagaacttcaagggttgcacaggtgattgaagattcgaagacatcaagaagcactaatttcaaaggttatttgaagattgggggtgttattccataggaa 22683987  T
Q  108 ttgaagaatcggggtagtttcaaggaatt-----------cttgtaatcaaacattc-atattctagtggaagtccttggtggagacgttttccatcaag 195  Q
    |||||||||   |||||||| ||||||||            |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  22683986 ttgaagaattaaggtagttttaaggaatttttgtaatcacattgtaatcaaacattcaatattctattggaagtccttggtggagatgttttccatcaag 22683887  T
Q  196 a 196  Q
    |    
T  22683886 a 22683886  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 17980341 - 17980589
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    ||||||||||||||| ||||  || ||||||||||||| ||||||| |||||||||||||||||||||  ||| |||||||||||||||| || ||||||    
T  17980341 tgaagagcttcaaggattgcttgggtgattgaggattctaagacatcaagaagcaccaatttcaaatggaatttgaagattgggggagtggttccatagg 17980440  T
Q  106 aattgaagaatcggggtagtttcaaggaattc-----------ttgtaatcaaacattcatattctagtggaagtccttggtggagacgttttccatc-- 192  Q
    |||||||||    | ||||||| || ||||||           |||||||||||||||||  || |||||||||||||||||||||| ||||||||||      
T  17980441 aattgaagagctagagtagtttgaatgaattcttgtaatcacattgtaatcaaacattcaatttttagtggaagtccttggtggagaggttttccatcaa 17980540  T
Q  193 -aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
     ||||||||  ||| | ||||| ||||||||||||  |||||||||||||    
T  17980541 gaagagtaggtgtaccccgaagtgaggacgaaagg-ggaactactataaa 17980589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 26023372 - 26023622
Alignment:
Q  6 tgaagagcttcaagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    ||||||| || ||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| | |||| |||| ||||||||||| || ||||||    
T  26023372 tgaagagtttgaagggttgcacgggtgattgaggattcgaagacatcaagaagcaccaaattcaaagggtatttgaagtttgggggagtggttacatagg 26023471  T
Q  106 aattgaagaatcggggtagtttcaaggaattcttgtaatcaaacattcatattc--------------tagtggaagtccttggtggagacgtttt---c 188  Q
      |||| |||   || ||||||||||||| ||||| ||||  |||||  |||||              |||||||||||||||||||||  |||||   |    
T  26023472 ggttgacgaactaggatagtttcaaggaactcttgcaatc--acatttgtattcgacattgttactattagtggaagtccttggtggaggtgtttttcac 26023569  T
Q  189 catcaagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    ||  |||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  26023570 caagaagagtagacatagcccgaagcgaggacgaaaggatgaactactataaa 26023622  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 250
Target Start/End: Original strand, 21872374 - 21872464
Alignment:
Q  160 tagtggaagtccttggtggagacgttttccatcaagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaatctcgatgt 250  Q
    ||||||||||||||| | ||||| ||||| ||||||||| |||||| | ||||||||||||||||||  |||| |||||||||| ||||||    
T  21872374 tagtggaagtccttgatagagacattttctatcaagagtggacgtaccccgaagcgaggacgaaagggggaaccactataaatcccgatgt 21872464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 17335679 - 17335549
Alignment:
Q  17 aagggttgcacggatga-ttgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaa 115  Q
    ||||||||||||| | | ||||||||| |||||||| |||||||||||| |||||| ||||||  |||  |||||||||| || ||||| | ||||||||    
T  17335679 aagggttgcacgggtaaattgaggatttgaagacatcaagaagcaccaaattcaaacgttatttcaagtctgggggagtgcttacatagaagttgaagaa 17335580  T
Q  116 tcggggtagtttcaaggaattcttgtaatca 146  Q
       || || ||||||| || |||||||||||    
T  17335579 ctaggataatttcaagaaactcttgtaatca 17335549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 17335487 - 17335439
Alignment:
Q  193 aagagtagacgtagctcgaagcgaggacgaaaggttgaactactataaa 241  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||||||    
T  17335487 aagagtagacgtagcttaaagcgaggacgaaagggtgaactactataaa 17335439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 39667081 - 39667174
Alignment:
Q  53 aagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaatcggggtagtttcaaggaattcttgtaatca 146  Q
    |||||||||||| |||||| | |||| |||| ||||||||||| ||  ||| ||  ||||||| | |||||||||||||||  |||||||||||    
T  39667081 aagaagcaccaaattcaaagggtatttgaagtttgggggagtggttagatatgaggtgaagaaccagggtagtttcaaggatctcttgtaatca 39667174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 29842016 - 29841890
Alignment:
Q  17 aagggttgcacggatgattgaggattcgaagacattaagaagcaccaatttcaaatgttattcgaagattgggggagtgattgcataggaattgaagaat 116  Q
    ||||| ||||| | |||||  ||||||||||| || || || |||||| |||||| |||||| |||| ||||||||||| ||  |||||  ||||||||     
T  29842016 aaggggtgcacaggtgattatggattcgaagatatcaataaacaccaaattcaaaggttatttgaagtttgggggagtgtttatataggggttgaagaac 29841917  T
Q  117 cggggtagtttcaaggaattcttgtaa 143  Q
      || || |||||||||| ||||||||    
T  29841916 taggatattttcaaggaactcttgtaa 29841890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 23140547 - 23140587
Alignment:
Q  422 acacatacacaattgtgttcattagtataattgattaattg 462  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  23140547 acacgtacacaattgtgttaattagtataagtgattaattg 23140587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 462
Target Start/End: Original strand, 23552337 - 23552377
Alignment:
Q  422 acacatacacaattgtgttcattagtataattgattaattg 462  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  23552337 acacgtacacaattgtgttaattagtataagtgattaattg 23552377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 23663059 - 23663011
Alignment:
Q  57 agcaccaatttcaaatgttattcgaagattgggggagtgattgcatagg 105  Q
    |||||||| |||||| |||||| |||| ||||||||||| |||||||||    
T  23663059 agcaccaaattcaaaggttatttgaagtttgggggagtgtttgcatagg 23663011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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