View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_high_19 (Length: 491)
Name: NF3892_high_19
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 470
Target Start/End: Complemental strand, 6186757 - 6186299
Alignment:
| Q |
12 |
acatcatcaatcggaaaagttggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggag |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||||| || |||||||||||| ||||| |
|
|
| T |
6186757 |
acatcatcgatcggaaaagttggtttggttgtcgcgtttttagtcctggttgttctcttggttcgatatttcaccgggaatacaaagactgatgccggag |
6186658 |
T |
|
| Q |
112 |
ttagagaattcaacggtagaaagactagtttcgacgatgtgatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
211 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186657 |
ttagagaattcaatggtagaaagacgagttttgatgatgtgatgaatgcaattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
6186558 |
T |
|
| Q |
212 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagact |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186557 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatgaagcaatggtgagaaaactctctgcatgtgagact |
6186458 |
T |
|
| Q |
312 |
atgggatctgctactactatttgtaccgacaaaacaggtactattgaaaaatacttgattctttaaaagctgttttcaaaagtgattatttattttgtaa |
411 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186457 |
atgggatctgctactactatttgcaccgacaaaacaggtactattgaaaaaaacttgattctttaaaagctgttttcaaaagtgattatttattttgtaa |
6186358 |
T |
|
| Q |
412 |
caagaatcttacttttgattctgtgatttgtaataggtacacttactttgaatcagatg |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6186357 |
caagaatcttacttttgattctgtgatttgtaataggtacacttactttgaatcagatg |
6186299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 356
Target Start/End: Complemental strand, 4243701 - 4243357
Alignment:
| Q |
12 |
acatcatcaatcggaaaagttggtttggttgtcgcgtttttagtcttggttgttttattgattcgatatttcaccggtaacacaaagactgataacggag |
111 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| ||||||||| | |||||| | |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4243701 |
acatcctcaatcggaaaggttggtttggctgtcgcatttttagtccttgttgttctgttgattcgatatttcaccgggaacacaaagactgataacggag |
4243602 |
T |
|
| Q |
112 |
ttagagaattcaacggtagaaagactagtttcgacgatgtgatgaatgcgattattggaattattgctgatgctgttactattgttgttgttgcaattcc |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || || |
|
|
| T |
4243601 |
ttagagagttcaacggtagaaagactagtttcgatgatgtgatgaatgcagttattggaattattgctgatgctgttactattgtcgttgttgctatccc |
4243502 |
T |
|
| Q |
212 |
tgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactctctgcatgtgagact |
311 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
4243501 |
cgagggtttaccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaact |
4243402 |
T |
|
| Q |
312 |
atgggatctgctactactatttgtaccgacaaaacaggtactatt |
356 |
Q |
| |
|
|||||||| |||||||||||||| || || || |||||||||||| |
|
|
| T |
4243401 |
atgggatcagctactactatttgcactgataagacaggtactatt |
4243357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 319
Target Start/End: Complemental strand, 38358195 - 38358065
Alignment:
| Q |
189 |
actattgttgttgttgcaattcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatcaagcaatggtga |
288 |
Q |
| |
|
|||||||| || ||||| || ||||||||||||||||| ||||||||| | || ||||| || || ||||| | ||||||||| ||||| || ||||||| |
|
|
| T |
38358195 |
actattgtggtcgttgccatccctgagggtttgccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtga |
38358096 |
T |
|
| Q |
289 |
gaaaactctctgcatgtgagactatgggatc |
319 |
Q |
| |
|
| ||||| || || ||||| ||||||||||| |
|
|
| T |
38358095 |
ggaaactttcagcttgtgaaactatgggatc |
38358065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 47487502 - 47487560
Alignment:
| Q |
182 |
tgctgttactattgttgttgttgcaattcctgagggtttgccattagctgtgacattga |
240 |
Q |
| |
|
||||||||| |||||||||||||| ||||||| ||||| || |||||||||||||||| |
|
|
| T |
47487502 |
tgctgttacaattgttgttgttgctgttcctgaaggtttacctttagctgtgacattga |
47487560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 39951730 - 39951669
Alignment:
| Q |
208 |
ttcctgagggtttgccattagctgtgacattgacacttgcatattcaatgaagaaaatgatg |
269 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
39951730 |
ttcccgagggtttaccattagctgtaacattgagtcttgcatttgcaatgaagaaaatgatg |
39951669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University