View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_22 (Length: 476)
Name: NF3892_high_22
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 157 - 462
Target Start/End: Original strand, 4051862 - 4052167
Alignment:
| Q |
157 |
gaagcacaacaatttagagtaatgcaacaaccttgtatagtgcatcatgatgaagaaacacacaaactgtaacaaaatagccaaaaatcaaccaaagagg |
256 |
Q |
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| T |
4051862 |
gaagcacaacaatttagagtaatgcaacaaccttgtatagtgcatcatgatgaagaaacacacaaactgtaacaaaatagccaaaaatcaaccaaagagg |
4051961 |
T |
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| Q |
257 |
attcattgcttaaattagcaataaattttgacaaaattacagtgacaccgtaattttaatttgttgaaacttcaaatccaatttttgtcaaaacaacggt |
356 |
Q |
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| T |
4051962 |
attcattgcttaaattagcaataaattttgacaaaattacagtgacaccgtaattttaatttgttgaaacttcaaattcaatttttgtcaaaacaacggt |
4052061 |
T |
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| Q |
357 |
aacacactctaattcagtcaatcgttaatccaaacatgcactagtcttatgaaacaaaatgaagaagcagaacaacaacaaaagtataatgaaacaacct |
456 |
Q |
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| T |
4052062 |
aacacactctaattcagtcaatcgttaatccaaacatgcactagtcttatgaaacaaaattaagaagcagaagaacaacaaaagtataatgaaacaacct |
4052161 |
T |
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| Q |
457 |
tgtata |
462 |
Q |
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|||||| |
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| T |
4052162 |
tgtata |
4052167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 4051698 - 4051799
Alignment:
| Q |
7 |
gaagcaaaggtgaagcttgagagtctaattttatcaa-------------tatatcgtaatttggtcaaactcaccataaaactaaacatacactcatag |
93 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4051698 |
gaagccaaggtgaagcttgagagtctaattttatcaaaatcacagtggtatatatcgtaatttggtcaaactcaccataaaactaaacatacactcatag |
4051797 |
T |
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| Q |
94 |
ct |
95 |
Q |
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|| |
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| T |
4051798 |
ct |
4051799 |
T |
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