View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_32 (Length: 425)
Name: NF3892_high_32
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Complemental strand, 47889030 - 47888684
Alignment:
| Q |
19 |
ttcatccatatgtcacaggtttagttggtctaagatatctatttgatgataattaaactaaagtatccttggtatttttattctgttgtctttaatttgg |
118 |
Q |
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| T |
47889030 |
ttcatccatatgtcacaggtttagttggtctaagatatctatttgatgataattaaactaaagtatccttggtatttttattctgctgtctttaatttgg |
47888931 |
T |
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| Q |
119 |
taaatatttttattcacttcggtttgtttttctccccagattggatatctgctgactaatgccgccaatccagttgctccaaagttgactgcaatggatt |
218 |
Q |
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| T |
47888930 |
taaatatttttattcacttcggtttgtttttctccccagattggatatctgctgattaatgccgccaattcagttgctccaaagttgactgcaatggatt |
47888831 |
T |
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| Q |
219 |
caaggtaagaacaaaacatttgcgcctgatttgaaggttaacacagtttttaattattctgatccttgttaaatccttgtcaggttccctttggagcacc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47888830 |
caaggtaagaacaaaacatttgcgcctgatttgaaggttaacacagtttttaattattctgatccttgttaaatccttgtcaggttccctttggagcacc |
47888731 |
T |
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| Q |
319 |
ttcttggaaggaaaccagcttacaaagaaaacaaaagtgatacagaa |
365 |
Q |
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| T |
47888730 |
ttcttggaaggaaaccagcttacaaagaaaacaaaagtgatacagaa |
47888684 |
T |
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