View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_33 (Length: 424)
Name: NF3892_high_33
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 43 - 374
Target Start/End: Complemental strand, 4098152 - 4097822
Alignment:
| Q |
43 |
agtaatagtagtaatcaaaacactctgtttttaacttttaacattttattgaatgcaatttatgttgatctcactattttatatgaaattcattttaaaa |
142 |
Q |
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| T |
4098152 |
agtaatagtagtaaccaaaacactctgtttttaacatttatcattttattgaatgcaatttatgttgatctcactattttatatgaaattcattttaaaa |
4098053 |
T |
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| Q |
143 |
atatgaaagatacggttaattttatccaataaaatattgaaggctnnnnnnntgttaaaagaaacatgttcatagcacacatcacaatcccagaacatga |
242 |
Q |
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| T |
4098052 |
atatgaaagatacggttaattttatccaataaaatattgaaggctaaaaaaatgttaaaa-aaacatgttcatagcacacatcacaatcccagaacatga |
4097954 |
T |
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| Q |
243 |
ttttcagttgcatgttacaaaaggcatacaaaccaccaacaataacagtgaagtaacgtatcagtcgttttccaatcttcgccaatcaatggaggtagaa |
342 |
Q |
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| T |
4097953 |
ttttcagttgcatgttacaaaaggcatacaaaccaccaacaataacagtgaagtaacgtatcagtcgttttccaatcttcgccaatcaatggaggtcgaa |
4097854 |
T |
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| Q |
343 |
actacttcaaaaatcaaacacattaaccattt |
374 |
Q |
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| T |
4097853 |
actacttcaaaaatcaaacgcattaaacattt |
4097822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 335 - 406
Target Start/End: Complemental strand, 4097770 - 4097699
Alignment:
| Q |
335 |
aggtagaaactacttcaaaaatcaaacacattaaccatttaaatacagtcttgagaatgcatggttgcactt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4097770 |
aggtagaaactacttcaaaaatcaaacacattaaccatttaaatacagtcttgagaatgcatggttgcactt |
4097699 |
T |
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