View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_34 (Length: 422)
Name: NF3892_high_34
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 38350545 - 38350156
Alignment:
| Q |
17 |
atgttcgtcacataataagtcatgctatatagcactcctcattttgaaatgcatgtaatacnnnnnnnnnnngagtggatataattactctttttcaaat |
116 |
Q |
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| T |
38350545 |
atgttcgtcacataataagtcgtgctatatagcactcctcatttttaaatgcatgtaatactttttttttt--agtggatataattactctttttcaaat |
38350448 |
T |
|
| Q |
117 |
ttatattttattaatactaacaggaattgatcttgaaatattaaaaatcaacattaaatgcacttnnnnnnnnnnnnnnnnnngttaatttaaaaatggc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38350447 |
ttatattttattaatactaacaggaattgatcttgaaatattaaaaatcaacattaaatgcacttaaaaaaataaaaaaaa--gttaatttaaaaatggc |
38350350 |
T |
|
| Q |
217 |
catacacaaattataagcatgaatcatactcctatattattattgatatgagtaaaaaagatataccgaagtattttgtaatcgtcgaccaatagagtaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38350349 |
catacacaaattataagcatgaatcatactcctatattattattactatgagtaaaaaagatataccgaagtattttgtaatcgtcgaccaatagagtaa |
38350250 |
T |
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| Q |
317 |
ctcatcacatcacttcagatcaagtgtgtctaggcaaatgttatcttaaataaataactatggttacattaaccttttaaaatcgtgctaccta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
38350249 |
ctcatcacatcacttcagatcaagtgtgtctaggcaaatgttatcttaaataaacaactatggttacattaaccttttaaaatcatgctaccta |
38350156 |
T |
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