View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_36 (Length: 416)
Name: NF3892_high_36
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 173 - 398
Target Start/End: Original strand, 20082576 - 20082801
Alignment:
| Q |
173 |
taagaaaattcaattgaaactgagatttcacaaagtattttgtggatgaacactgcttttgaaatcttgatggagctcaacgatagattttatcaagttt |
272 |
Q |
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| T |
20082576 |
taagaaaattcaattgaaactgagatttcacaaagtattttgtggatgaacactgcttctgaaatcttgaaggatctcaacgatagattttatcaagttt |
20082675 |
T |
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| Q |
273 |
tatgtcttcaaaatttctgatattcaagaagaaatctatactcggaagcaagattattcttctatttctttttattacaccaagatgaagaaattatagc |
372 |
Q |
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| T |
20082676 |
gatatcttcaaaatttctgatattcaagaagaaatctatactctgaagcaagattattattctatttctttttattacacgaagatgaagaaattatagc |
20082775 |
T |
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| Q |
373 |
aggaaatagataattccaggcctatt |
398 |
Q |
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| T |
20082776 |
aggaaatagataattccaggcctatt |
20082801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 20082279 - 20082374
Alignment:
| Q |
13 |
catcatttccgagagctctgcaaagagtgttaatcgtggattcacaaacaccaagaacaagg--tatcataattatattcttagtccatatttcat |
106 |
Q |
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| T |
20082279 |
catcatttccgagagttctccaaagagtgttaatggtggattcacaaacaccaagaacaagggttatcataatgatattcttagtccatatttcat |
20082374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 131 - 174
Target Start/End: Original strand, 20082476 - 20082519
Alignment:
| Q |
131 |
cacaaataacatttcatcaatggttctttaccacgacctccata |
174 |
Q |
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| T |
20082476 |
cacaaataacatttcatcaatggttctttaccacgacctccata |
20082519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 292 - 404
Target Start/End: Original strand, 33304914 - 33305026
Alignment:
| Q |
292 |
atattcaagaagaaatctatactcggaagcaagattattcttctatttctttttattacaccaagatgaagaaattatagcaggaaatagataattccag |
391 |
Q |
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|||| |||||||||||||| |||| |||||||| | ||||||||||||||| ||||||||||||||||||||| | | |||| || ||||||||| ||| |
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| T |
33304914 |
atatccaagaagaaatctacactctgaagcaaggtgattcttctatttcttcctattacaccaagatgaagaaactttggcagaaattagataatttcag |
33305013 |
T |
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| Q |
392 |
gcctatttctgat |
404 |
Q |
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| T |
33305014 |
gcccattcctgat |
33305026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 387
Target Start/End: Original strand, 30869576 - 30869675
Alignment:
| Q |
288 |
tctgatattcaagaagaaatctatactcggaagcaagattattcttctatttctttttattacaccaagatgaagaaattatagcaggaaatagataatt |
387 |
Q |
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|||||||| |||||||||||||| |||| ||| |||| | |||||||||| |||| |||||| | |||||||||||| | | ||||||| ||||||||| |
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| T |
30869576 |
tctgatatccaagaagaaatctacactctgaaacaaggtgattcttctatctcttcttattatatcaagatgaagaagctttggcaggaattagataatt |
30869675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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