View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_48 (Length: 357)

Name: NF3892_high_48
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_48
NF3892_high_48
[»] chr4 (8 HSPs)
chr4 (16-185)||(24056783-24056952)
chr4 (151-195)||(22905032-22905076)
chr4 (151-195)||(22956700-22956744)
chr4 (151-195)||(43441788-43441832)
chr4 (151-194)||(44645346-44645389)
chr4 (33-93)||(26728379-26728439)
chr4 (147-223)||(26728493-26728569)
chr4 (137-209)||(34821674-34821746)
[»] chr8 (2 HSPs)
chr8 (145-203)||(4903479-4903537)
chr8 (149-202)||(3961182-3961235)
[»] chr7 (1 HSPs)
chr7 (163-203)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 185
Target Start/End: Complemental strand, 24056952 - 24056783
Alignment:
Q  16 aaggtgaggatgtatggtggtggggattggaagagaacggttgtttctcggtgaactctatgtacaagaagttggaggggatgcggtttgaggagggatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24056952 aaggtgaggatgtatggtggtggggattggaagagaacggttggttctcggtgaactctatgtacaagaagttggaggggatgcggtttgaggagggatc 24056853  T
Q  116 gctaacggagatgcaagtcaaggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggct 185  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24056852 gctaacagagatgcgagtcaaggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggct 24056783  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 22905076 - 22905032
Alignment:
Q  151 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 195  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  22905076 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 22905032  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 22956744 - 22956700
Alignment:
Q  151 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 195  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  22956744 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 22956700  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 43441832 - 43441788
Alignment:
Q  151 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 195  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  43441832 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 43441788  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 194
Target Start/End: Original strand, 44645346 - 44645389
Alignment:
Q  151 tttggaagagttcagctccgtccaaagtggtggctttttcttgg 194  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  44645346 tttggaagagttcggctccatccaaggtggtggctttttcttgg 44645389  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 26728379 - 26728439
Alignment:
Q  33 tggtggggattggaagagaacggttgtttctcggtgaactctatgtacaagaagttggagg 93  Q
    |||||| ||||||||| ||| ||| | ||  ||||||| ||||||||||||||||||||||    
T  26728379 tggtggagattggaagggaatggtggatttacggtgaaatctatgtacaagaagttggagg 26728439  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 26728493 - 26728569
Alignment:
Q  147 catatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctttatgattggatcccgacgaa 223  Q
    ||||||||||| ||| | |||||||| |||||||| |  || ||||||||| | ||| |||||||||| ||||||||    
T  26728493 catatttggaaaagtccggctccgtctaaagtggtagaattctcttggaaattgcttcatgattggataccgacgaa 26728569  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 34821746 - 34821674
Alignment:
Q  137 ggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctttatgat 209  Q
    ||||||| |||| ||| |||||||||| ||||| || |||||||| |  ||| |||||||||||||| |||||    
T  34821746 ggtgtttgcgcaaattcggaagagttcggctccatctaaagtggtcgtctttgcttggaaacttcttcatgat 34821674  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 4903479 - 4903537
Alignment:
Q  145 cgcatatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctt 203  Q
    ||||||||||||||||  | || ||||| |||||||||| |||| ||||||||||||||    
T  4903479 cgcatatttggaagagcccggcaccgtcgaaagtggtggtttttacttggaaacttctt 4903537  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 3961235 - 3961182
Alignment:
Q  149 tatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttct 202  Q
    ||||||||| || |||||||| || || || |||||||||||||||||||||||    
T  3961235 tatttggaaaagctcagctccctcaaaggtcgtggctttttcttggaaacttct 3961182  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 32016682 - 32016722
Alignment:
Q  163 cagctccgtccaaagtggtggctttttcttggaaacttctt 203  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  32016682 cagccccgtcaaaagttgtggctttttcttggaaacttctt 32016722  T

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