View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_5 (Length: 698)
Name: NF3892_high_5
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 165 - 408
Target Start/End: Original strand, 32937855 - 32938098
Alignment:
| Q |
165 |
atggtataattaataggaatttcatccagcaatgctgctacatttgggctaggagctattcaggtaaaaagctatacatgttctacaatagattcggctt |
264 |
Q |
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| T |
32937855 |
atggtataattaataggaatttcatccagcaatgctgctacatttgggctaggagctattcaggtaaaaagctatacatgttctacaatagattcggctt |
32937954 |
T |
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| Q |
265 |
cataagagtatcgaataatcgaaatatcaacaacaaaaatcattcacaaacttttttaattatgcaggttgtaatgactggggttgctacttggttagta |
364 |
Q |
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| T |
32937955 |
catatgagtatcgaataatcgaaatatcaataacaaaaatcattcacaaacttttttaattatgcaggttgtaatgactggggttgctacttggttagta |
32938054 |
T |
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| Q |
365 |
gacagaagtggtagaagagtgcttcttatagtaagtattaagac |
408 |
Q |
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| T |
32938055 |
gacagaagtggtagaagagtgcttcttatagtaagtattaagac |
32938098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 472 - 683
Target Start/End: Original strand, 32938153 - 32938361
Alignment:
| Q |
472 |
ccattttagttaatttttattaatctcttgtaggtatcttcctctgtgatgactgttagcctactgcttgttgctacagcattttatctacaggttggta |
571 |
Q |
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| T |
32938153 |
ccattttagttaatttttattaatctcttgtaggtatcttcctctgtgatgactgttagcctactgcttgttgctacagcattttatctacaggttggta |
32938252 |
T |
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| Q |
572 |
attaattatcacatctcttgaaatttaattcaatttttatactaaataattgatgttatttaattgaactcagggagttgtaacaagtggctctgacctt |
671 |
Q |
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| T |
32938253 |
atta---atcacatctcttgaaatttaattcaatttttacactaaataattgatgttatttaattgaactcagggagttgtaacaagtggctctgacctt |
32938349 |
T |
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| Q |
672 |
tatagaatgatg |
683 |
Q |
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| T |
32938350 |
tatagaatgatg |
32938361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 32937701 - 32937799
Alignment:
| Q |
1 |
cttgtgctgcaacaactttctggtatcaacggtgtannnnnnnatgcaagtaaaatcttttcaagcgcaggtaatcaactatatcttttcaccaactga |
99 |
Q |
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| T |
32937701 |
cttgtgctgcaacaactttctggtatcaacggtgtatttttctatgcaagtaaaatcttttcaagcgcaggtaatcaactatatcttttcaccaactga |
32937799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 32931957 - 32932007
Alignment:
| Q |
179 |
aggaatttcatccagcaatgctgctacatttgggctaggagctattcaggt |
229 |
Q |
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| T |
32931957 |
aggaatttcatccagcaatgctgctaccgttggacttggagcaattcaggt |
32932007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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