View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_51 (Length: 349)
Name: NF3892_high_51
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 2 - 341
Target Start/End: Complemental strand, 46102710 - 46102371
Alignment:
| Q |
2 |
gatgtgtccttaaaattgaggataatagtatcgttattgttgatcatatagtttatagtttctatttatgatgctgttcaccatgaaccgttgatagaga |
101 |
Q |
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| T |
46102710 |
gatgtgtccttaaaattgaggataatagtatcgttattgttgatcatatagtttatagtttctatttatgatgctgttcactatgaaccgttgatagaga |
46102611 |
T |
|
| Q |
102 |
cacagacacggacacgtcgacactagtgatagtttgaaaacgtgaattgtttgaatgtaatcacttttgtccatgtatgtatctgtgtcagacacaaaca |
201 |
Q |
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| T |
46102610 |
cacagacatggacacgtcgacactagtgatagtttgaaaacgtgaattgtttgaatgtaatcacttttgtccatgtatgtatctgtgtcagacacaaaca |
46102511 |
T |
|
| Q |
202 |
tgtgttggccacggccggacacaccttcaatccgaaatgccggtgctccataggctgatcatatactttctatttatgatgctgatcatatagttgatta |
301 |
Q |
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| T |
46102510 |
tgtgttggccacgtccggacacaccttcaatccgaaatgccggtgctccataggctgatcatatactttctatttatgatgctgatcatatagttgatta |
46102411 |
T |
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| Q |
302 |
gggtacctatatgttggatatgtattcatagttgatgatg |
341 |
Q |
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| T |
46102410 |
gggtacctatatgttggatatgtattcatagttgatgatg |
46102371 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 28322234 - 28322286
Alignment:
| Q |
113 |
acacgtcgacactagtgatagtttgaaaacgtgaattgtttgaatgtaatcac |
165 |
Q |
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| T |
28322234 |
acacgtcgacactagtgataatttgagaaaatgaattaattgaatgtaatcac |
28322286 |
T |
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