View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_56 (Length: 343)
Name: NF3892_high_56
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 28029088 - 28029372
Alignment:
| Q |
10 |
attattcttatgaacaattaagggatgcctagttaaaaactaatgaaggtctaaatatcttattttaagagagaggtcagtgtaattttcttaaatattg |
109 |
Q |
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| T |
28029088 |
attactcttatgaacaattaagggatgcctagtttaaaactaatgaaggtctaaat----tattttaagagag--gtcagtgtaattttcttaaatattg |
28029181 |
T |
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| Q |
110 |
tgtttgttttctannnnnnnatcattagaaagtttaacttttaatacaaatggtaaaaatttacctttaaaccatttttcagaggtttagatacacactt |
209 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28029182 |
tgtttgttttccatttttttatcattagaaagtttaacttttaatacaaatggtaaaaatttacctttaaaccatttttcagaggtttagatacacaatt |
28029281 |
T |
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| Q |
210 |
ttttcttgatactcaattttaggaagaatgtttcagggtcagcataataatttttaatagtgagggagctttacaacaaatataaatgagg |
300 |
Q |
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| T |
28029282 |
ttttcttgatactttattttaggaagaatgtttcagggtgagcctaataatttttaatagtgagtgagctttacaacaaatataaatgagg |
28029372 |
T |
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