View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_62 (Length: 325)

Name: NF3892_high_62
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_62
NF3892_high_62
[»] chr4 (1 HSPs)
chr4 (18-303)||(21237157-21237442)
[»] chr1 (13 HSPs)
chr1 (50-283)||(3372345-3372577)
chr1 (37-295)||(3361360-3361617)
chr1 (71-304)||(2006129-2006362)
chr1 (144-302)||(3218647-3218805)
chr1 (188-283)||(3340300-3340395)
chr1 (144-304)||(2010300-2010460)
chr1 (144-304)||(2019519-2019679)
chr1 (156-288)||(3349142-3349274)
chr1 (165-288)||(6601894-6602017)
chr1 (182-275)||(3345323-3345416)
chr1 (186-261)||(2948633-2948708)
chr1 (149-305)||(4323235-4323391)
chr1 (71-304)||(2011637-2011870)
[»] chr2 (5 HSPs)
chr2 (138-305)||(39273791-39273958)
chr2 (150-305)||(20934214-20934369)
chr2 (149-298)||(20952757-20952906)
chr2 (150-305)||(20923231-20923386)
chr2 (149-305)||(20926828-20926985)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 21237157 - 21237442
Alignment:
Q  18 atatatgattgtacgttattaacatagtttgtttactgattcatctatcatttgtttgaatatgaatatatgtatataaagggaagaaaacgttcaaagc 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21237157 atatatgattgtacgttattaacatagtttgtttactgaatcatctatcatttgtttgaatatgaatatatgtatataaagggaagaaaacgttcaaagt 21237256  T
Q  118 ctacctgcttgacaatcaaagatgcagagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21237257 ctacctgcttgacaatcaaagatgcagagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagc 21237356  T
Q  218 attgagaacaagtgtattatccagcaaatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21237357 attgagaacaagtgtattatccagcaaatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctg 21237442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 50 - 283
Target Start/End: Original strand, 3372345 - 3372577
Alignment:
Q  50 ttactgattcatctatcatttgtttgaatatgaatatatgtatataaagggaagaaaacgttcaaagcctacctgcttgacaatcaaagatgcagagctg 149  Q
    ||||||||| ||||||| ||||||||||||||||| |||  || |||||||||||||||| |||||| ||||   | ||||||| |||||||||||||||    
T  3372345 ttactgatttatctatcctttgtttgaatatgaat-tatcgatctaaagggaagaaaacgatcaaagtctacacacctgacaataaaagatgcagagctg 3372443  T
Q  150 gataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatgga 249  Q
    ||||| ||||||| |||||||||| |||||| ||| |||||||||| || | |||||||||| |||||| ||||||||||||| ||||||||||  ||||    
T  3372444 gatagaattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctgga 3372543  T
Q  250 gaaacaaatggtacactatgccaaatcttgtgtt 283  Q
    | ||||||||||||||  | ||||||||||||||    
T  3372544 ggaacaaatggtacacactaccaaatcttgtgtt 3372577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 37 - 295
Target Start/End: Original strand, 3361360 - 3361617
Alignment:
Q  37 taacatagtttgtttactgattcatctatcatttgtttgaatatgaatatatgtatataaagggaagaaaacgttcaaagcctacctgcttgacaatcaa 136  Q
    |||| ||||||||||||| ||| ||||||| ||||||| ||||||||| | |  || | ||||||||||||||||||||| |||||||| ||| | | ||    
T  3361360 taacctagtttgtttactaattaatctatcctttgtttaaatatgaat-tctcgatcttaagggaagaaaacgttcaaagtctacctgcctgatagtgaa 3361458  T
Q  137 agatgcagagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtatta 236  Q
    ||||||  |  ||||||| ||||||| |||||||| | | |||| |||||||||  | | | |||||||||| ||||||||| ||||||||||| | |||    
T  3361459 agatgcctatttggatagaattagttgcttaccagatcacgtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtatttta 3361558  T
Q  237 tccagcaaatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattg 295  Q
    |||||||||||||| ||||||||||||||  | ||||||||||| || |||||||||||    
T  3361559 tccagcaaatggagtaacaaatggtacacgctaccaaatcttgtatttgataaacattg 3361617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 304
Target Start/End: Original strand, 2006129 - 2006362
Alignment:
Q  71 gtttgaatatgaatatatgtatataaagggaagaaaacgttcaaagcctacctgcttgacaatcaaagatgcagagctggataggattagttccttacca 170  Q
    ||||||||||| |||||| ||| |||||| ||| ||||  |||||| ||||| || | | ||| | ||| |  |||| |||||| |||||||  |||| |    
T  2006129 gtttgaatatggatatatttatctaaaggcaaggaaaccatcaaagtctacccgcctaaaaatgatagacggggagccggatagaattagttatttacta 2006228  T
Q  171 ggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtacactatgc 270  Q
    ||| |||||| |||| ||||||| | |||||||||||||| ||||||  ||||||||||||| ||||||| |||||||||  ||||||||  ||| || |    
T  2006229 ggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaacaaatggaggtacaaatgggccacaatac 2006328  T
Q  271 caaatcttgtgttcgataaacattgtgtctctgc 304  Q
    ||||||||||||| |||||||| |||||||||||    
T  2006329 caaatcttgtgtttgataaacaatgtgtctctgc 2006362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 302
Target Start/End: Complemental strand, 3218805 - 3218647
Alignment:
Q  144 gagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagca 243  Q
    |||| |||||| ||||||| |||||||||| |||||| ||| |||||||||| | |||||||||||| ||||||| ||| ||||||||| || |||||      
T  3218805 gagccggatagaattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagtg 3218706  T
Q  244 aatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctct 302  Q
    ||||||| || |||||| ||||  | |||||| ||||||| |||  | |||||||||||    
T  3218705 aatggaggaataaatggcacacactaccaaatattgtgtttgatttaaattgtgtctct 3218647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 283
Target Start/End: Original strand, 3340300 - 3340395
Alignment:
Q  188 gattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtacactatgccaaatcttgtgtt 283  Q
    |||||||| ||||||| |||||||||||||| | ||||||||||| ||||| ||||| |||||||| ||||||| |||| | ||| ||||||||||    
T  3340300 gattctctcacacttgtcaattaaggaagcagtaagaacaagtgttttatcgagcaattggagaaagaaatggtccactttaccagatcttgtgtt 3340395  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 2010300 - 2010460
Alignment:
Q  144 gagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagca 243  Q
    |||| |||||| |||||||  ||||| ||| |||||| |||||  ||| | |||| |||||| |||| ||| |   ||||||||||||| |||| || ||    
T  2010300 gagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgttgtgagaacaagtgttttatgcaaca 2010399  T
Q  244 aatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgc 304  Q
    |||||||  ||||||||  ||| || |||||||||||||| |||||||| |||||||||||    
T  2010400 aatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgc 2010460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 2019519 - 2019679
Alignment:
Q  144 gagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagca 243  Q
    |||| |||||| |||||||  ||||| ||| |||||| |||||  ||| | |||| |||||| |||| ||| ||  ||||||||||||| ||||||| ||    
T  2019519 gagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgctgtgagaacaagtgttttatccaaca 2019618  T
Q  244 aatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgc 304  Q
    |||||||  ||||||||  ||| |||||||||||||| ||  |||||||  ||||||||||    
T  2019619 aatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgtctctgc 2019679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 3349142 - 3349274
Alignment:
Q  156 attagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaaca 255  Q
    ||||||| |||||||| | || | | ||| |||||||||| ||||||| ||||||||||| || | ||||||||||| ||||| ||| ||||||| || |    
T  3349142 attagttgcttaccagatcatcttatagagcagattctctcacacttgacaattaaggaatcagtaagaacaagtgtgttatcgagcgaatggaggaaga 3349241  T
Q  256 aatggtacactatgccaaatcttgtgttcgata 288  Q
    |||||| |||  | ||| |||||||||| ||||    
T  3349242 aatggtccacactaccagatcttgtgtttgata 3349274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 288
Target Start/End: Complemental strand, 6602017 - 6601894
Alignment:
Q  165 ttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtaca 264  Q
    ||||||||| || ||| |||||| ||||||| |   |||||||||||||||||| ||||||||||| | ||||| | |||||||||  ||||||||  ||    
T  6602017 ttaccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggcca 6601918  T
Q  265 ctatgccaaatcttgtgttcgata 288  Q
    |  | |||||||||||||| ||||    
T  6601917 cacttccaaatcttgtgtttgata 6601894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 3345416 - 3345323
Alignment:
Q  182 agaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtacactatgccaaat 275  Q
    |||||||||||| |   |||||||||||| ||||||| |||||| ||||||  ||||||  |||||||||||||||| |||||| || ||||||    
T  3345416 agaccagattctatcttacttgccaattagggaagcagtgagaataagtgttatatccaaaaaatggagaaacaaattgtacacaataccaaat 3345323  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 261
Target Start/End: Complemental strand, 2948708 - 2948633
Alignment:
Q  186 cagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggt 261  Q
    |||||||||| ||||||| |||||||||||||| | | ||||||||| ||||| ||| ||||||| || |||||||    
T  2948708 cagattctctcacacttgacaattaaggaagcagtaacaacaagtgtgttatcgagcgaatggaggaataaatggt 2948633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 4323391 - 4323235
Alignment:
Q  149 ggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatgg 248  Q
    |||||| |||||||  || |||||| |||||||||| |||||| | |   ||||||| |||| ||| ||| ||||||||||||| || || || || |||    
T  4323391 ggatagaattagttggttgccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgttttgtcgaggaattgg 4323292  T
Q  249 agaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgct 305  Q
    || || |||||||| ||  | |||||||||||| | |||| ||| ||||| ||||||    
T  4323291 aggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtgtctgct 4323235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 304
Target Start/End: Original strand, 2011637 - 2011870
Alignment:
Q  71 gtttgaatatgaatatatgtatataaagggaagaaaacgttcaaagcctacctgcttgacaatcaaagatgcagagctggataggattagttccttacca 170  Q
    |||||||||||||| ||| ||| |||||| | ||||||  ||| || ||| |||| | | ||| | ||| |  |||| |||||| ||||||   ||||||    
T  2011637 gtttgaatatgaatgtatttatctaaaggcaggaaaactatcagagtctagctgcctaataatgatagacgaggagccggatagaattagtgttttacca 2011736  T
Q  171 ggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtacactatgc 270  Q
    ||| |||||| ||||| |||| | | |  ||||||||||| ||| |   ||||||||||| | ||||| | |||||||||  ||||||||  ||| || |    
T  2011737 ggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtattttatcaaacaaatggaggtacaaatggatcacaatac 2011836  T
Q  271 caaatcttgtgttcgataaacattgtgtctctgc 304  Q
    ||||||||||||| |||  ||| ||||| |||||    
T  2011837 caaatcttgtgtttgattcacaatgtgtgtctgc 2011870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 39273791 - 39273958
Alignment:
Q  138 gatgcagagctggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattat 237  Q
    ||||||||||||||||| ||||||| |||||| ||| |||||| ||| |||||||| |    ||||||||||| ||||||| ||||||||||||| || |    
T  39273791 gatgcagagctggatagaattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgt 39273890  T
Q  238 ccagcaaatggagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgct 305  Q
    ||||| |||||||  |||||||||||||  | |||||||||||||| |||| || |||||||||||||    
T  39273891 ccagccaatggaggtacaaatggtacacactaccaaatcttgtgtttgatagacgttgtgtctctgct 39273958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 305
Target Start/End: Original strand, 20934214 - 20934369
Alignment:
Q  150 gataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatgga 249  Q
    ||||| || |||| |||||||||| |||||| ||||||||||||     |||||||||||| ||||||| ||||||||||||| ||||| |  |||||||    
T  20934214 gatagaataagttgcttaccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatgga 20934313  T
Q  250 gaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgct 305  Q
    | ||||||||||||||  | |||||||||||||| |||| ||| ||| ||||||||    
T  20934314 ggaacaaatggtacacactcccaaatcttgtgtttgatagacaatgtctctctgct 20934369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 298
Target Start/End: Original strand, 20952757 - 20952906
Alignment:
Q  149 ggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatgg 248  Q
    |||||| || |||| |||||||||| |||||| ||| ||||||||     |||||| ||||| ||| ||| ||||||||||||| ||||| || ||||||    
T  20952757 ggatagaataagttgcttaccaggtcatgtaatagatcagattctgacttacttgcaaattagggatgcagtgagaacaagtgttttatctagaaaatgg 20952856  T
Q  249 agaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgt 298  Q
    || ||||||||| ||||  | |||||||||||||| |||| | |||||||    
T  20952857 aggaacaaatggaacacacttccaaatcttgtgtttgatagaaattgtgt 20952906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 305
Target Start/End: Original strand, 20923231 - 20923386
Alignment:
Q  150 gataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatgga 249  Q
    ||||| ||||||| |||||||| | || ||| ||||||  |||| | || |||| |||| |||||||||  |||||||||||| ||||| | ||||||||    
T  20923231 gatagaattagttgcttaccagatcatataatagaccattttctttcacgcttgtcaatcaaggaagcagggagaacaagtgttttatctaacaaatgga 20923330  T
Q  250 gaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgct 305  Q
    | || ||||||| |||    ||  ||||||||||||||||||| ||||| ||||||    
T  20923331 ggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgct 20923386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 305
Target Start/End: Original strand, 20926828 - 20926985
Alignment:
Q  149 ggataggattagttccttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaa-tg 247  Q
    |||||| ||||||| |||||| | | |||||| ||| ||||||||     || ||||||||| |||||||  |||||||||||| ||||| |  ||| ||    
T  20926828 ggatagaattagttgcttacctgatcatgtaatagatcagattctaacttacgtgccaattagggaagcagcgagaacaagtgttttatctaaaaaaatg 20926927  T
Q  248 gagaaacaaatggtacactatgccaaatcttgtgttcgataaacattgtgtctctgct 305  Q
    ||| |||||| |||||||  | ||||||||||| || ||||  || ||||||||||||    
T  20926928 gaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtctctgct 20926985  T

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