View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_7 (Length: 646)

Name: NF3892_high_7
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_7
NF3892_high_7
[»] chr5 (1 HSPs)
chr5 (1-631)||(26380364-26380991)


Alignment Details
Target: chr5 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 631
Target Start/End: Complemental strand, 26380991 - 26380364
Alignment:
Q  1 taaaagccactggttcctcaataggtctagtaggataaagaaattgaggaagctgttgaagtcccctattggaaggaaaataaagtggtgttgaaggaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26380991 taaaagccactggttcctcaataggtctagtaggataaagagattgaggaagctgttgaagtcccctattagaaggaaaataaagtggtgttgaaggaac 26380892  T
Q  101 attgtttacatttggagtagtagtgtacatgataggatttgttgtaacatcccatgatcctaaatcattctccattccaaaagaagaccctcttggtgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380891 attgtttacatttggagtagtagtgtacatgataggatttgttgtaacatcccatgatcctaaatcattctccattccaaaagaagaccctcttggtgaa 26380792  T
Q  201 ggatacacaacatgttgttcataagggttataaggcgcagaacaagacgggttttgcagctgaaccggaacaactctacctctacctctaccataacaaa 300  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380791 ggatacacaacatgttgttcataagggttataaggcgaagaaaaagacgggttttgcagctgaaccggaacaactctacctctacctctaccataacaaa 26380692  T
Q  301 ctccatgaccataaggagcattgtttccaagatcaatagaagaacccatttgagatattccagtaaaggtgtgacctttttgcataccccacttgatatt 400  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26380691 ctccattaccataaggaacattgtttccaagatcaatagaagaacccatttgagatattccagtaaaggtgtgacctttttgcataccccacttgatatt 26380592  T
Q  401 ttcagaaactaaaccttgtggattttgtgaaaccccaaaagttgaggcttttggactaccaccac---cacccatgttttggtaacgtgggtgtgttact 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  26380591 ttcagaaactaaaccttgtggattttgtgaaaccccaaaagttgaggcttttggactaccaccaccaccacccatgttttggtaacgtgggtgtgttact 26380492  T
Q  498 gttactgtttcatcatcaacaacgttgttattgttgttgttgtatgcatgagattcccaaaaacgaggcatgttagtgaatgattcaacaagattgttat 597  Q
    ||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  26380491 gttactgtttcatcatcaacaacgttgtta------ttgttgtatgcatgagattcccaaaaacaaggcatgttagtgaatggttcaacaagattgttat 26380398  T
Q  598 tactattattacctctgattctggacatgttgtt 631  Q
    ||||||||||||||||||||||||||||||||||    
T  26380397 tactattattacctctgattctggacatgttgtt 26380364  T

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