View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_73 (Length: 303)
Name: NF3892_high_73
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 39509763 - 39510039
Alignment:
| Q |
21 |
gaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaa |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39509763 |
gaatgaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgctgacataagaa |
39509862 |
T |
|
| Q |
121 |
tgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||| |
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| T |
39509863 |
tgctgatcaagaggaccagttcttgaaagaccaaaatcagcaactttagctacaagatgctcatcaagcaatatgttagtggacttcacatcgcggtgaa |
39509962 |
T |
|
| Q |
221 |
tgataccaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
297 |
Q |
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|||| ||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39509963 |
tgattccaccagctgctcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttc |
39510039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 297
Target Start/End: Original strand, 39542832 - 39543104
Alignment:
| Q |
25 |
gaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgct |
124 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||| |||||||| ||||| || ||||| || ||||||| |||| ||||||||||||| | |
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| T |
39542832 |
gaataaacatcagatttttctgtaagctgttgtgctctaaagtaatcaggatcaagatacccaaaagtccctttaacacgtgtgctgacataagaatgtt |
39542931 |
T |
|
| Q |
125 |
gatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgat |
224 |
Q |
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| T |
39542932 |
catcaagaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcatcaagcaatatattagtggatttcacgtcacggtgaattat |
39543031 |
T |
|
| Q |
225 |
accaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
297 |
Q |
| |
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||||||||| | |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
39543032 |
tccaccagctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttc |
39543104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 297
Target Start/End: Original strand, 39574673 - 39574939
Alignment:
| Q |
31 |
acatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgctgatcaa |
130 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||| || ||||| ||||| || ||||| || ||||||| |||| ||||||||||||| ||||||| |
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| T |
39574673 |
acatcggatttttctgtaagctgttgtgatctaaagtaatccggatcaagatacccaaaagtccctttaacacatgtgctgacataagaatgttgatcaa |
39574772 |
T |
|
| Q |
131 |
gaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgataccacc |
230 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||| ||||||| || ||||||||||| || |||||||| ||||| ||||| || || ||||| |
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| T |
39574773 |
gaggacctgtccttgaaagaccaaaatcagcaactttagctacaagattctcgtcaagcaatatattagtggatttcacatcacggtggattattccacc |
39574872 |
T |
|
| Q |
231 |
agctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
297 |
Q |
| |
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||| | |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
39574873 |
ggctactcctttgtgaaggtaatgaagacctctagcagcaccaatgcaaatctcaagcctttgcttc |
39574939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 25 - 297
Target Start/End: Original strand, 39579200 - 39579472
Alignment:
| Q |
25 |
gaatacacatcagatttttctgtaagctgttgtgatctaaagtactcaggatcgagataaccgaaagttcccttaacacctgtgttgacataagaatgct |
124 |
Q |
| |
|
||||| ||||| |||||||||||||| ||| ||||||||||||| |||||||| ||||| || ||||| || |||||||||||| | ||||||||||| | |
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| T |
39579200 |
gaataaacatcggatttttctgtaaggtgtagtgatctaaagtaatcaggatcaagatacccaaaagtccctttaacacctgtgctcacataagaatgtt |
39579299 |
T |
|
| Q |
125 |
gatcaagaggaccagttcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatgat |
224 |
Q |
| |
|
||||||||||||| | ||||||| |||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||| ||||| || || |
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| T |
39579300 |
gatcaagaggacctgcctttgaaaggccaaaatcagcaactttagcaacaagattctcatcaagcaatatattagtggatttcacatcacggtggattat |
39579399 |
T |
|
| Q |
225 |
accaccagctgcccctttgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
297 |
Q |
| |
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|||||||| | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39579400 |
tccaccagcaactcctttgtgaaggtaatgaagacctctagcagcaccaatacaaatctcaagcctttgcttc |
39579472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 297
Target Start/End: Original strand, 35904669 - 35904724
Alignment:
| Q |
242 |
tgtgaaggtattgaagacctcttgcagcaccaatacaaatctcaagcctttgcttc |
297 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| | |||||||||| |
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| T |
35904669 |
tgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttc |
35904724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 17349942 - 17349860
Alignment:
| Q |
141 |
tcttgaaagaccaaaatcagcaactttagcaacaagatgttcatcaagcaatatgtttgtggattttacatcgcggtgaatga |
223 |
Q |
| |
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|||||||||||| |||||||| || ||||||||| ||| ||| || ||||| ||||| |||||||| | |||||||| |||| |
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| T |
17349942 |
tcttgaaagaccgaaatcagccaccttagcaacatgatcttcgtcgagcaaaatgttggtggatttaatgtcgcggtggatga |
17349860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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