View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_76 (Length: 300)
Name: NF3892_high_76
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_76 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 32552712 - 32552429
Alignment:
| Q |
1 |
agctcaacgttactgcctccaatttttgcattgatttttaaagcaagatttgtgagatattggtctttcccttcattagcattaccagataagcagcact |
100 |
Q |
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| T |
32552712 |
agctcaacgttactgcctccaatttttgcattgatttttaaagcaagatttgtgagatattggtctttcccttcattagcattaccagataagcagcact |
32552613 |
T |
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| Q |
101 |
gtgtcactatgccaaccttggtctcagcaatccacttgaggctcttgtaacctggatccttgttggccatcacacaaaggagaaattgtagccgccgtcg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32552612 |
gtgtcactatgccaaccttggtctcagcaatccacttgaggctcttgtaacctggatccttgttggccatcacacaaaggagaaattgtagccgccgtcg |
32552513 |
T |
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| Q |
201 |
acacnnnnnnngaaccttctcatttattttttcaagtaactcacatagtaaattgtaatccccaagtttccacattgcagaata |
284 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32552512 |
acactttttttgaaccttctcatttattttttcaagtaactcacatagtaaattgtaatccccaagtttccacattgcagaata |
32552429 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 10754396 - 10754486
Alignment:
| Q |
100 |
tgtgtcactatgccaaccttggtctcagcaatccacttgaggctcttgtaacctggatccttgttggccatcacacaaaggagaaattgta |
190 |
Q |
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||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||| || || |||||||| || || |||||||||| |
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| T |
10754396 |
tgtgtcactataccaactttggtctcagaaatccacttgaggtatttgtaacctggacttttattagccatcacgcagagaagaaattgta |
10754486 |
T |
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