View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_77 (Length: 298)
Name: NF3892_high_77
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_77 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 43803057 - 43803180
Alignment:
| Q |
14 |
agatcacaattcatgtatatatacatcttgtactttccataattgagtaatgagaatcactttttctatttgtttcttttgttcataatatatgctaaca |
113 |
Q |
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| T |
43803057 |
agatcacaattcatgtatatatacatcttgtactttccataattgagtaatgagaatcactttttctatttgtttcttttgttcataatatatgctaaca |
43803156 |
T |
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| Q |
114 |
ataatggattagaaattcaaaagt |
137 |
Q |
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| T |
43803157 |
ataatggattagaaatccaaaagt |
43803180 |
T |
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Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 43803203 - 43803268
Alignment:
| Q |
124 |
agaaattcaaaagtgttgtacagtatctataaaaaacaataatagggttatttgaaccaccttaga |
189 |
Q |
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| T |
43803203 |
agaaattcaaaagtgttgtacagtatctataaaaaacaataatagggttatttgaaccaccttaga |
43803268 |
T |
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