View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_83 (Length: 288)
Name: NF3892_high_83
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_83 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 3228180 - 3227910
Alignment:
| Q |
18 |
ggtgtttctgatatgattggcctcggagtggcatgcctccaaaacgacaggagtcggcacatccaccaccggtgactgggtcttaagaacaggtttggta |
117 |
Q |
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| T |
3228180 |
ggtgtttctgatatgattggcctcggagtggcatgcctccaaaatgacaggagtcggcacatccaccaccggtgactgggtcttaagaacaggtttggta |
3228081 |
T |
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| Q |
118 |
tcatcctttgctggtatgaaaactaatgctcgaactacaaattcatactttaaataaaataaattttacaagcaatatcaattctcgtttaaatcattca |
217 |
Q |
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| T |
3228080 |
tcatcctttgctggtatgaaagctaatgctcgaactacaaattcatacttcaaataaaataaattttacaagcaatatcaattctcgtttaaatcatcca |
3227981 |
T |
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| Q |
218 |
ataaaataaaaccaattctacgatctctagaattaattgactcctccaaaattgaaagcaaacatacaagt |
288 |
Q |
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| T |
3227980 |
ataaaataaaaccaattctacgatctctagaattaattgactcctccaaaattgaaagcaaacatacaagt |
3227910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 8342364 - 8342439
Alignment:
| Q |
12 |
acagagggtgtttctgatatgattggcctcggagtggcatgcctccaaaacgacaggagtcggcacatccaccacc |
87 |
Q |
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| T |
8342364 |
acagagggtgtgtctgatatgattggcctcggagtggcatgcctccaaaacgacaggagacggcacatccaccacc |
8342439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 3229003 - 3228967
Alignment:
| Q |
102 |
aagaacaggtttggtatcatcctttgctggtatgaaa |
138 |
Q |
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| T |
3229003 |
aagaacaggtttggtatcatcctttgctggcatgaaa |
3228967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 39933384 - 39933431
Alignment:
| Q |
92 |
actgggtctt-aagaacaggtttggtatcatcctttgctggtatgaaa |
138 |
Q |
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| T |
39933384 |
actgggtcttgaagaacaggtttggtgtcatcctttgctggcatgaaa |
39933431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 29779138 - 29779210
Alignment:
| Q |
179 |
aattttacaagcaatatcaattctcgtttaaatcattcaataaa-ataaaaccaattctacgatctctagaat |
250 |
Q |
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| T |
29779138 |
aattctacaagcaaaatcaattctcttttaaatcatccaaacatgataaaatcaattctacaatctctagaat |
29779210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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