View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_88 (Length: 267)
Name: NF3892_high_88
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_88 |
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| [»] chr7 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 267
Target Start/End: Original strand, 45141823 - 45142069
Alignment:
| Q |
21 |
atcgtggccatgattatgtttcgtccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaat |
120 |
Q |
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| T |
45141823 |
atcgtggccatgattatgttacatccaaacatggtctcttaggacttgtacgttcaacgtgtggtgagcttggagcttacggaattagagtcaattcaat |
45141922 |
T |
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| Q |
121 |
ctcaccgaatggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaagga |
220 |
Q |
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| T |
45141923 |
ctcaccgtatggtgttgccacgcctcttgcatgtagagcactgaatatggagatgagtaaagttgaagctaatatgaaagattctgctaatttgaaagga |
45142022 |
T |
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| Q |
221 |
attacactaaaggctacgcatattgcagaagctgctctctttcttgc |
267 |
Q |
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| T |
45142023 |
attacactaaaggctacgcatattgcagaagctgctctctttcttgc |
45142069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 44 - 267
Target Start/End: Original strand, 45152491 - 45152714
Alignment:
| Q |
44 |
tccaaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgc |
143 |
Q |
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| T |
45152491 |
tccaaacatggtcttataggccttgttcgctcaacgtgcagtgagcttggagcttatggaataagagttaattcaatttcaccttctggtgttgccacac |
45152590 |
T |
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| Q |
144 |
ctcttgcatgtagagcactgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatat |
243 |
Q |
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| T |
45152591 |
ctcttttatgtagagcactgaacaaggatgtgagtgaagttgaagctattgggaatgattctgctaatttgaaaggaattacactaaaggctggtcatat |
45152690 |
T |
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| Q |
244 |
tgcagaagctgctctctttcttgc |
267 |
Q |
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| T |
45152691 |
tgcagaagctgctatgtttcttgc |
45152714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 267
Target Start/End: Original strand, 38256313 - 38256533
Alignment:
| Q |
47 |
aaacatggtctcttaggacttgtacgttcaacgtgcggtgagcttggagcttacggaattagagtcaattcaatctcaccgaatggtgttgccacgcctc |
146 |
Q |
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| T |
38256313 |
aaacatggtcttataggccttgttaggtcagcatgcggtgagcttggagcttatggaatcagagtcaattcaatctcaccctatgctgttgctacacctc |
38256412 |
T |
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| Q |
147 |
ttgcatgtagagcactgaatatggagatgagtgaagttgaagctaatatgaaagattctgctaatttgaaaggaattacactaaaggctacgcatattgc |
246 |
Q |
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| T |
38256413 |
ttgcatgtagagcactggacatggtgccgagtgaagttgaagctgttggccttgattatgctaatttgcagggaattacattgaaggctgctcatattgc |
38256512 |
T |
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| Q |
247 |
agaagctgctctctttcttgc |
267 |
Q |
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| T |
38256513 |
agagactgctttgtttcttgc |
38256533 |
T |
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