View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_high_92 (Length: 261)

Name: NF3892_high_92
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_high_92
NF3892_high_92
[»] chr5 (2 HSPs)
chr5 (69-253)||(28385569-28385753)
chr5 (69-253)||(12540920-12541104)
[»] chr7 (1 HSPs)
chr7 (72-244)||(3417296-3417468)
[»] chr2 (3 HSPs)
chr2 (69-253)||(13440435-13440619)
chr2 (69-251)||(13448598-13448780)
chr2 (71-219)||(13455071-13455219)
[»] chr4 (4 HSPs)
chr4 (69-184)||(48958382-48958497)
chr4 (69-184)||(48912171-48912286)
chr4 (74-148)||(48974349-48974423)
chr4 (92-138)||(48965587-48965633)
[»] chr6 (2 HSPs)
chr6 (71-253)||(12589926-12590108)
chr6 (69-252)||(12483222-12483405)
[»] scaffold0536 (1 HSPs)
scaffold0536 (69-184)||(6337-6452)
[»] chr8 (1 HSPs)
chr8 (69-146)||(12641345-12641422)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 28385569 - 28385753
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28385569 caggaacaacccatatgaatgggtgacctgatgcttctactgcgcatgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatat 28385668  T
Q  169 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28385669 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactcttgtttcccttctctgct 28385753  T

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Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 12540920 - 12541104
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    ||||||||||||||||||||||||||||   | |||||| ||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||||||     
T  12540920 caggaacaacccatatgaatgggtgacccattccttctactgcacatgcaatctcatatagttgtttgtcaaagaaatgatttatgcttccaaaacatat 12541019  T
Q  169 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 253  Q
    |||||| |||||||||||| ||||||| ||||||||| | ||| |||||||||||||| || ||| ||| |||||| || |||||    
T  12541020 gtacaccactgagttaacttgctgtgagttgagccagctaagggactcgtgctcgctcgcagcaccctcatttcccctccctgct 12541104  T

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Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 72 - 244
Target Start/End: Complemental strand, 3417468 - 3417296
Alignment:
Q  72 gaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatacgta 171  Q
    ||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  3417468 gaacaacccatatgaatgggtgacccgatgcttctattgcgtatgcaatctcatatagttgtttatcagagaaatagtttaagcttccaaaacatatgta 3417369  T
Q  172 cacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttccc 244  Q
    ||  |||||||||||| | ||||| ||||||||   ||||||||| ||||| ||| || ||| ||||||||||    
T  3417368 caacactgagttaacttgttgtgagttgagccaacgcaggcactcatgctcactctcagcaccctcgtttccc 3417296  T

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Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 69 - 253
Target Start/End: Original strand, 13440435 - 13440619
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||     
T  13440435 caggaacaacccatatgaatgggtgactagatgcttctattgcgcacgccatctcatatagttgtttatcagagaaatagttgatgcttccaaaacatat 13440534  T
Q  169 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 253  Q
    |||||  || |||||||||  || ||| | ||||||  ||| ||| ||||||  | ||||||||| ||| |||||| ||||||||    
T  13440535 gtacaacaccgagttaactttctctgagtcgagccaactcatgcattcgtgcatgttcacatcaccctcctttcccctctctgct 13440619  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 13448598 - 13448780
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    |||||||||||||||||||||||||||| ||||||||||| || || || ||||| ||||||||||||||||| |||| ||| ||||||||||||||||     
T  13448598 caggaacaacccatatgaatgggtgaccggatgcttctatcgcacatgccatctcgtatagttgtttatcagaaaaatagttgatgcttccaaaacatat 13448697  T
Q  169 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctg 251  Q
    |||||  ||||||||||||| || ||| | ||||||  |||||| ||||||| |  ||||| ||| ||| |||||| ||||||    
T  13448698 gtacaacactgagttaactctctctgaatcgagccaactcaggctctcgtgcacattcacagcaccctcatttcccctctctg 13448780  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 219
Target Start/End: Original strand, 13455071 - 13455219
Alignment:
Q  71 ggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatacgt 170  Q
    ||||||||||||||||| || ||||||| |||||||| || ||| || ||||||||||||||||||| |||  |||  || |||||||||||||||| ||    
T  13455071 ggaacaacccatatgaacggttgacctgctgcttctagtgagcatgccatctcatatagttgtttattagatgaataattgatgcttccaaaacatatgt 13455170  T
Q  171 acacaactgagttaactcgctgtgatttgagccagttcaggcactcgtg 219  Q
    |||  ||||||||||||| || ||| |  |||||| |||||||||||||    
T  13455171 acaatactgagttaactctctttgagtcaagccagctcaggcactcgtg 13455219  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 184
Target Start/End: Original strand, 48958382 - 48958497
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    |||||||||||||||  |||  ||||||||||||||||||  | |||||||||||||| |||||||||||||| ||||    |||||||||||| ||||     
T  48958382 caggaacaacccatacaaattcgtgacctgatgcttctatcccacacgcaatctcataaagttgtttatcagataaataacatatgcttccaaagcatat 48958481  T
Q  169 gtacacaactgagtta 184  Q
    |||||  |||||||||    
T  48958482 gtacaacactgagtta 48958497  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 48912286 - 48912171
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    ||||||||||||||||||||  |||||  |||||||| ||  |||||||||||||||| ||||||||||| || |||||   |  ||||||||| ||||     
T  48912286 caggaacaacccatatgaattcgtgactcgatgcttcaatcccgcacgcaatctcataaagttgtttatccgaaaaatgacattggcttccaaagcatat 48912187  T
Q  169 gtacacaactgagtta 184  Q
    |||||| || ||||||    
T  48912186 gtacaccaccgagtta 48912171  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 48974349 - 48974423
Alignment:
Q  74 acaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatgg 148  Q
    ||||||||||||||| ||||||| ||||||||||||||||  ||||||||||| | ||| |||| || |||||||    
T  48974349 acaacccatatgaattggtgacccgatgcttctattgcgcttgcaatctcatacaattgcttattagtgaaatgg 48974423  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 138
Target Start/End: Original strand, 48965587 - 48965633
Alignment:
Q  92 tgacctgatgcttctattgcgcacgcaatctcatatagttgtttatc 138  Q
    ||||| |||||||||||||| |||||||||||||| || ||||||||    
T  48965587 tgacccgatgcttctattgcacacgcaatctcataaagctgtttatc 48965633  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 253
Target Start/End: Complemental strand, 12590108 - 12589926
Alignment:
Q  71 ggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatacgt 170  Q
    |||| |||||||| ||||  ||| ||||||||||||||  | |||| ||||||||| ||||||||||| ||||||| |  |||||| ||||| |||| ||    
T  12590108 ggaataacccatacgaattcgtggcctgatgcttctatgccacacgaaatctcataaagttgtttatctgagaaatagcatatgctcccaaagcatatgt 12590009  T
Q  171 acacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgct 253  Q
    |||  || |||||| ||||||  || || |||||  |||| ||||| ||| || ||||| ||||||| |||||| | ||||||    
T  12590008 acaacacagagttatctcgcttcgagtttagccaactcagacactcttgcacgttcacaacactctcatttcccctatctgct 12589926  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 12483405 - 12483222
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    ||||||||||||||||||||   | ||| |||||||||||| |||| | ||| || || || |||||||||||||||| |  || ||| ||||| ||||     
T  12483405 caggaacaacccatatgaattttttacccgatgcttctattccgcatgaaatttcgtaaagctgtttatcagagaaattgcataggctcccaaagcatat 12483306  T
Q  169 gtacacaactgagttaactcgctgtgatttgagccagttcaggcactcgtgctcgctcacatcactctcgtttcccttctctgc 252  Q
    |||||  ||||| ||  || ||| ||| || |||||  |  | ||||| ||| |||||||| |||||||||||||| |||||||    
T  12483305 gtacaacactgaattttcttgctttgagtttagccaactttgacactcatgcacgctcacaacactctcgtttcccctctctgc 12483222  T

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Target: scaffold0536 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 184
Target Start/End: Complemental strand, 6452 - 6337
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaatggtttatgcttccaaaacatac 168  Q
    ||||||||||||||||||||  |||||| |||||||||||  | || |||||||| || ||||||||||| | |||| ||  || ||||||||| ||||     
T  6452 caggaacaacccatatgaatttgtgacccgatgcttctatcccacatgcaatctcgtaaagttgtttatccgggaaaaggcataagcttccaaagcatat 6353  T
Q  169 gtacacaactgagtta 184  Q
    |||||  |||||||||    
T  6352 gtacaacactgagtta 6337  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 12641422 - 12641345
Alignment:
Q  69 caggaacaacccatatgaatgggtgacctgatgcttctattgcgcacgcaatctcatatagttgtttatcagagaaat 146  Q
    |||||||||||||||  |||  |||||||||   ||||||| ||| ||||||||| || |||||||||||||||||||    
T  12641422 caggaacaacccatacaaattcgtgacctgaattttctattccgctcgcaatctcgtaaagttgtttatcagagaaat 12641345  T

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