View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_high_99 (Length: 253)
Name: NF3892_high_99
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_high_99 |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 7237561 - 7237465
Alignment:
| Q |
157 |
tataggttaaattatttacttggaatgctgtgaatttgaatggagattcattcttaagaacaccatctttaaaccatctctcaggtttaaatgaagc |
253 |
Q |
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| T |
7237561 |
tataggttaaattatttacttggaatgctgtgaatttgaatggagattcattcttaagaacaccatctttaaaccatctctcaggtttaaatgaagc |
7237465 |
T |
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Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 7237703 - 7237605
Alignment:
| Q |
15 |
tcaaaatttgcaatatgttaactatcgacatggtagagaattgagaacatgactctctctcccaataaaaagaacctgagtttgattcctggaagcacg |
113 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7237703 |
tcaaaatttgcaatatgttaactatcaatatggtagagaattgagaacatgactctctctcccaataaaaagaatctgagtttgattcctggaagcacg |
7237605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 49590699 - 49590795
Alignment:
| Q |
157 |
tataggttaaattatttacttggaatgctgtgaatttgaatggagattcattcttaagaacaccatctttaaaccatctctcaggtttaaatgaagc |
253 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
49590699 |
tataggttaaactatttacctggaatgctgtgaatttgaatggagattcattcttaagaacaccatctttgaaccatctctcaggtttaaatgaagc |
49590795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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