View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_101 (Length: 253)
Name: NF3892_low_101
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_101 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 11 - 228
Target Start/End: Complemental strand, 39527017 - 39526799
Alignment:
| Q |
11 |
caaagggaatatgagtccaacatttcatcgtgtgatgatgaatataaacattacatagtaaaagtttacgactctgaatctaaacataagtaggccatgc |
110 |
Q |
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| T |
39527017 |
caaagggaatatgagtccaacatttcatcgtgtgatgatgaatataaacattacatagtaaaagtttacgactctgaatctaaacataagtaggccatgc |
39526918 |
T |
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| Q |
111 |
aattaatgcatataacaaaatgacatcaattgaagccatccaagcatgaccacatcttttcaataggaaaatattggaccacatgcagatgcaaggtaac |
210 |
Q |
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| T |
39526917 |
aattaatgcatataacaaaatgacatcaattgaagccatccaagcatgaccacatcttttcaataggaaaatattggaccacatgcagatgcaaggtaac |
39526818 |
T |
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| Q |
211 |
cct-ttttccgagtcaatg |
228 |
Q |
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| T |
39526817 |
ccttttttccgagtcaatg |
39526799 |
T |
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