View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_104 (Length: 251)
Name: NF3892_low_104
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_104 |
 | |
|
| [»] chr8 (10 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 33005425 - 33005185
Alignment:
| Q |
11 |
caaaggccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtc |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33005425 |
caaagaccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagatcaatgaactagctttagggttagagctgagtggtc |
33005326 |
T |
|
| Q |
111 |
aaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttaccaagtgggttctt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33005325 |
aaaaattcttgtgggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttaccaagtgggttctt |
33005226 |
T |
|
| Q |
211 |
agggagaaccaaagaacaaggattagtagtttctttttggg |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33005225 |
agggagaaccaaagaacaaggattagtagtttctttttggg |
33005185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 3778176 - 3778052
Alignment:
| Q |
24 |
ctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtg |
123 |
Q |
| |
|
||||||||||||| |||||||||||| | | | |||||||||| ||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
3778176 |
ctgttttgtatgtctcctttggaagtgcatgcactttatctcaacagcagatcaatgaactagcattagggttagaggtgagtggtcagaaattcttgtg |
3778077 |
T |
|
| Q |
124 |
ggttttgagagaacctaataattct |
148 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
3778076 |
ggttttgagagaacctagtaattct |
3778052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 3700906 - 3701037
Alignment:
| Q |
17 |
ccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaat |
116 |
Q |
| |
|
||||| || ||||||||||| | |||||||||| |||||| |||||||||| | || || |||||||||||||| ||||| ||| ||||| ||| |||| |
|
|
| T |
3700906 |
ccaaactcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacaaatcaatgaactagctttggggttggagttgagtaatcagaaat |
3701005 |
T |
|
| Q |
117 |
tcttgtgggttttgagagaacctaataattct |
148 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
3701006 |
tcttgtgggttttgagagaacctagtaattct |
3701037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 140
Target Start/End: Original strand, 3707673 - 3707796
Alignment:
| Q |
17 |
ccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaat |
116 |
Q |
| |
|
||||| || ||||||||||||| |||||||||| |||||| |||||||||| | || | |||||||||||||| ||| | || |||||||||| |||| |
|
|
| T |
3707673 |
ccaaactcagttttgtatgtgtgctttggaagtggaggaactttatctcaacaacaaaccaatgaactagctttggggctggaattgagtggtcagaaat |
3707772 |
T |
|
| Q |
117 |
tcttgtgggttttgagagaaccta |
140 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3707773 |
tcttgtgggttttgagagaaccta |
3707796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 140
Target Start/End: Complemental strand, 3770522 - 3770399
Alignment:
| Q |
17 |
ccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaat |
116 |
Q |
| |
|
||||| || ||||||||||| | |||||||||| |||||| ||| |||||| | || | |||||||||||||| ||| | ||| |||||||||| |||| |
|
|
| T |
3770522 |
ccaaactcagttttgtatgtctgctttggaagtggaggaactttttctcaacaacaaaccaatgaactagctttggggctggagttgagtggtcagaaat |
3770423 |
T |
|
| Q |
117 |
tcttgtgggttttgagagaaccta |
140 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3770422 |
tcttgtgggttttgagagaaccta |
3770399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 3719182 - 3719303
Alignment:
| Q |
17 |
ccaaagtctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaat |
116 |
Q |
| |
|
||||| || ||||||||||| | |||||||||| |||||| |||||||||| | ||||| |||||| ||||||| | ||| ||| ||||| ||| |||| |
|
|
| T |
3719182 |
ccaaactcagttttgtatgtctgctttggaagtggaggaactttatctcaacaacagatcaatgaattagctttggcgttggagttgagtaatcagaaat |
3719281 |
T |
|
| Q |
117 |
tcttgtgggttttgagagaacc |
138 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
3719282 |
ttttgtgggttttgagagaacc |
3719303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 3701080 - 3701155
Alignment:
| Q |
176 |
aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttggg |
251 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||| ||||| ||| || |||||| |
|
|
| T |
3701080 |
aatgacctattaaagtacttaccacatgggttcttagagagaaccaaagaacaagggttagttgttcctctttggg |
3701155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 3777988 - 3777940
Alignment:
| Q |
203 |
gggttcttagggagaaccaaagaacaaggattagtagtttctttttggg |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
3777988 |
gggttcttagagagaaccaaagaacaagggttagttgttcctttttggg |
3777940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 3770348 - 3770273
Alignment:
| Q |
176 |
aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttggg |
251 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||| || |||||| |
|
|
| T |
3770348 |
aatgacctattaaagtacttaccacatgggttcttagaaagaaccaaagaacaagggttagttgttcctctttggg |
3770273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 3707856 - 3707922
Alignment:
| Q |
185 |
ttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttggg |
251 |
Q |
| |
|
||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| ||| || |||||| |
|
|
| T |
3707856 |
ttaaagtacttaccacatgggttcttagatagaaccaaagaacaagggttagttgttcctctttggg |
3707922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University