View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_105 (Length: 251)
Name: NF3892_low_105
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_105 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 38275205 - 38275436
Alignment:
| Q |
1 |
gggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtga |
100 |
Q |
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| T |
38275205 |
gggaatttgatgaaataaaagagaaccgaaaactataaccacatcatccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtga |
38275304 |
T |
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| Q |
101 |
acacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaaaatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38275305 |
acacacaaaatacattgacacctagagacgtggataacaaacatcttaccgactgttgagaaaataaatatatctttgataacgaaaggggggaaaatgc |
38275404 |
T |
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| Q |
201 |
ataaaaattataaggataaggaaaaactcacc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38275405 |
ataaaaattataaggataaggaaaaactcacc |
38275436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 36870449 - 36870555
Alignment:
| Q |
46 |
atccattcttccttgaatcatctcagacatctcaattctaaaagcatgacagtgaacacacaaaatacattgacacctagagacgtggataacaaacatc |
145 |
Q |
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||||||||||||||| ||||||||||| |||||| ||||||||||| |||| |||||| |||| |||||||||||||||||||| | |||||||||| |
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| T |
36870449 |
atccattcttccttgcatcatctcagaattctcaaatctaaaagcataacagagaacacttgaaatgcattgacacctagagacgtgaagaacaaacatc |
36870548 |
T |
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| Q |
146 |
ttaccga |
152 |
Q |
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| T |
36870549 |
ttaccga |
36870555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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