View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_107 (Length: 250)
Name: NF3892_low_107
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_107 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 16591717 - 16591920
Alignment:
| Q |
43 |
tttgatgaagagctcttttgga--gccccttcaaatgagattggaaagtttgcatatttattcttgatttctagcaaaattgagatgcttgaatcttcat |
140 |
Q |
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| T |
16591717 |
tttgatgaagagctcttttggttcgcccattcaaatgagattggaaagtttgcatatttgttcttgatttctagcaaaattgagatgcttgaatcttcat |
16591816 |
T |
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| Q |
141 |
ttttcatctagt----nnnnnnnnntcaagagaaacacacatacaaaattataagaaaaactaatgaggctgaaattaaagtaattaggttaagttaccc |
236 |
Q |
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| T |
16591817 |
ttttcatctagtaaaaaaagtaaattcaagagaaaaacacatacaaaattataagaaaaacaaatgaggctgaaattaaagtaattaggttaagttaccc |
16591916 |
T |
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| Q |
237 |
tttg |
240 |
Q |
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|||| |
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| T |
16591917 |
tttg |
16591920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 16591631 - 16591676
Alignment:
| Q |
175 |
acatacaaaattataagaaaaactaatgaggctgaaattaaagtaa |
220 |
Q |
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| T |
16591631 |
acatacaaaattataagaaaaactaataagacttaaaataaagtaa |
16591676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 204
Target Start/End: Original strand, 16591265 - 16591293
Alignment:
| Q |
176 |
catacaaaattataagaaaaactaatgag |
204 |
Q |
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| T |
16591265 |
catacaaaattataagaaaaactaatgag |
16591293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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