View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3892_low_108 (Length: 250)

Name: NF3892_low_108
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3892_low_108
NF3892_low_108
[»] chr3 (9 HSPs)
chr3 (1-241)||(28829006-28829246)
chr3 (179-235)||(46622250-46622306)
chr3 (166-241)||(8735730-8735805)
chr3 (166-241)||(9087971-9088046)
chr3 (179-235)||(49095658-49095714)
chr3 (172-241)||(45244927-45244996)
chr3 (179-235)||(3902255-3902311)
chr3 (179-235)||(33439833-33439889)
chr3 (179-223)||(35142745-35142789)
[»] chr4 (4 HSPs)
chr4 (178-235)||(25490829-25490886)
chr4 (177-241)||(42660142-42660206)
chr4 (194-235)||(48318546-48318587)
chr4 (179-235)||(54630938-54630994)
[»] scaffold0016 (1 HSPs)
scaffold0016 (167-235)||(205564-205632)
[»] chr5 (4 HSPs)
chr5 (179-235)||(38872276-38872332)
chr5 (179-241)||(37094248-37094310)
chr5 (179-232)||(38692240-38692293)
chr5 (172-241)||(43387825-43387894)
[»] chr1 (5 HSPs)
chr1 (200-241)||(24470667-24470708)
chr1 (179-235)||(32817254-32817310)
chr1 (172-240)||(43318756-43318824)
chr1 (179-235)||(45046310-45046366)
chr1 (195-235)||(49678102-49678142)
[»] chr8 (5 HSPs)
chr8 (173-241)||(36403613-36403681)
chr8 (179-235)||(42280347-42280403)
chr8 (179-231)||(27927398-27927450)
chr8 (179-223)||(34853985-34854029)
chr8 (179-235)||(40995315-40995371)
[»] chr7 (1 HSPs)
chr7 (179-235)||(3936640-3936696)
[»] chr2 (3 HSPs)
chr2 (173-233)||(9846971-9847031)
chr2 (179-235)||(17474237-17474292)
chr2 (183-235)||(44465199-44465251)
[»] chr6 (1 HSPs)
chr6 (179-232)||(2540113-2540166)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 28829006 - 28829246
Alignment:
Q  1 ttttagtctagtaacnnnnnnngtttggattcagtccctgaaaattgaaaaacaattgagctatgcattacagggatgattatcatatttaagttttgtt 100  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||| |||||    
T  28829006 ttttagtctagtaactttttttgtttggattcagtccctgaaaattgaaaaacagttgagctatgcattgcaggaatgattatcatatttaagtcttgtt 28829105  T
Q  101 tatttggacgttgggcttagatctgaactagcggctatttatcagagcgtgggccccagcgacaaaaatttaagagatttacttttcccaacttatggcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  28829106 tatttggacgttgggcttagatctgaactagcggctatttatcagagcgtgggccccagcgacaaaaatttaagagatttacttttcccatcttatggcc 28829205  T
Q  201 ttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  28829206 ttcttgcgcgccctgtaaaatttccaaaaatacccctttgc 28829246  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 46622250 - 46622306
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||||| |||||||||||  |||||||||||||||||  ||||||||||    
T  46622250 ttacttttcccaacctatggccttctcccgcgccctgtaaaattttcaaaaatgccc 46622306  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 8735805 - 8735730
Alignment:
Q  166 aaatttaagagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    |||||| ||||  |||||||||||| | | | | ||||| ||||||||||||||||||| ||||||||||||||||    
T  8735805 aaattttagagtattacttttcccaccctgttgtcttctcgcgcgccctgtaaaatttccaaaaatgcccctttgc 8735730  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 9088046 - 9087971
Alignment:
Q  166 aaatttaagagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    |||||| ||||  |||||||||||| | | | | ||||| ||||||||||||||||||| ||||||||||||||||    
T  9088046 aaattttagagtattacttttcccaccctgttgtcttctcgcgcgccctgtaaaatttccaaaaatgcccctttgc 9087971  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 49095658 - 49095714
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||  ||| |||||||||||||| ||||||||||    
T  49095658 ttacttttcccaccctatggccttctcccgcaccctgtaaaatttccaaaaatgccc 49095714  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 45244996 - 45244927
Alignment:
Q  172 aagagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    ||||||||||||||| |||||||||||  ||||  ||||  |||||||||||  |||||||| |||||||    
T  45244996 aagagatttactttttccaacttatggttttctcacgcgttctgtaaaattttcaaaaatgctcctttgc 45244927  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 3902255 - 3902311
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||  ||||||||||||  |||| ||||||||||    
T  3902255 ttacttttcccaccctatggccttctcccgcgccctgtaatttttcaaaaaatgccc 3902311  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 33439889 - 33439833
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||| ||||||  |||||||||  ||||||||||    
T  33439889 ttacttttcccaccctatggccttcttccgcgcctagtaaaattttcaaaaatgccc 33439833  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 35142789 - 35142745
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaattt 223  Q
    |||||||||||| | |||||||||||  |||||||||||||||||    
T  35142789 ttacttttcccaccctatggccttctcccgcgccctgtaaaattt 35142745  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 25490829 - 25490886
Alignment:
Q  178 tttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||||||    
T  25490829 tttacttttcccaccttatggtcttctttcgcgccctgtaaaatttccaaaaatgccc 25490886  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 42660142 - 42660206
Alignment:
Q  177 atttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    |||||||||||||| | ||| ||||||| ||||||||||||||||||  |||||| |||||||||    
T  42660142 atttacttttcccaccctattgccttctcgcgcgccctgtaaaattttcaaaaatacccctttgc 42660206  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 48318546 - 48318587
Alignment:
Q  194 tatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||  |||||||||||||||||| ||||||||||    
T  48318546 tatggccttctcccgcgccctgtaaaatttccaaaaatgccc 48318587  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 54630938 - 54630994
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||  |||| ||||||||||||  ||||||||||    
T  54630938 ttacttttcccaccctatggccttctctcgcgtcctgtaaaattttcaaaaatgccc 54630994  T

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Target: scaffold0016 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 205564 - 205632
Alignment:
Q  167 aatttaagagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    ||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||  ||||||||||    
T  205564 aattttagagatttacttttcccgccctatggccttctcgcgcgccctgtaaaattttcaaaaatgccc 205632  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 38872332 - 38872276
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||    
T  38872332 ttacttttcccaccttatggccttctcccgcgccctgtaaaatttcaaaaaatgccc 38872276  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 37094248 - 37094310
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    |||||||||||| | | | | ||||| ||||||||||||||||||  ||||||||||||||||    
T  37094248 ttacttttcccaccctgttgacttctcgcgcgccctgtaaaattttcaaaaatgcccctttgc 37094310  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Original strand, 38692240 - 38692293
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatg 232  Q
    |||||||||||| | |||||||||||  |||||||||||||||||  |||||||    
T  38692240 ttacttttcccaccatatggccttctcccgcgccctgtaaaattttcaaaaatg 38692293  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 43387825 - 43387894
Alignment:
Q  172 aagagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    ||||||||||||||| |||   ||||||||||  |||||   ||||||||||| ||||||||||||||||    
T  43387825 aagagatttactttttccactctatggccttcccgcgcgtggtgtaaaatttctaaaaatgcccctttgc 43387894  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 200 - 241
Target Start/End: Original strand, 24470667 - 24470708
Alignment:
Q  200 cttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  24470667 cttcttgcgcgccctgtaaaatttccaaaaatgcccctttgc 24470708  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 32817254 - 32817310
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | ||| |||||||  |||||||||||||||||  ||||||||||    
T  32817254 ttacttttcccaccctatagccttctcccgcgccctgtaaaattttcaaaaatgccc 32817310  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 43318756 - 43318824
Alignment:
Q  172 aagagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttg 240  Q
    |||||| ||| |||| ||| | ||| ||||||| ||||||||||||||||||  |||||||| ||||||    
T  43318756 aagagaattattttttccatcctattgccttctcgcgcgccctgtaaaatttttaaaaatgctcctttg 43318824  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 45046310 - 45046366
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | || || |||||  |||||||||||||||||| ||||||||||    
T  45046310 ttacttttcccaccctacggtcttctcccgcgccctgtaaaatttccaaaaatgccc 45046366  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 49678142 - 49678102
Alignment:
Q  195 atggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    ||||||||||| |||| ||||||||||||| ||||||||||    
T  49678142 atggccttcttccgcgtcctgtaaaatttccaaaaatgccc 49678102  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 241
Target Start/End: Original strand, 36403613 - 36403681
Alignment:
Q  173 agagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgcccctttgc 241  Q
    ||||| |||||||||||| | ||| ||||||| ||||||| ||||||||||  ||||||||||||||||    
T  36403613 agagagttacttttcccaccctatagccttctcgcgcgccttgtaaaattttcaaaaatgcccctttgc 36403681  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 42280347 - 42280403
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||  |||||||||||||||||| ||||||||||    
T  42280347 ttacttttcccatcctatggccttctcccgcgccctgtaaaatttccaaaaatgccc 42280403  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Original strand, 27927398 - 27927450
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaat 231  Q
    |||||||||||| | |||||||||||  ||||| |||||||||||| ||||||    
T  27927398 ttacttttcccaccctatggccttctctcgcgcactgtaaaatttccaaaaat 27927450  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 34854029 - 34853985
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaattt 223  Q
    |||||||||||| | |||||||||||  |||||||||||||||||    
T  34854029 ttacttttcccaccctatggccttctcccgcgccctgtaaaattt 34853985  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 40995371 - 40995315
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||  |||| ||||||||||||  ||||||||||    
T  40995371 ttacttttcccatcctatggccttctcccgcgtcctgtaaaattttcaaaaatgccc 40995315  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 3936696 - 3936640
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||| |||||||||||||||||  ||||||||||    
T  3936696 ttacttttcccaccctatggccttcttccgcgccctgtaaaattttcaaaaatgccc 3936640  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 9846971 - 9847031
Alignment:
Q  173 agagatttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgc 233  Q
    ||||| |||||||||||| | ||| ||||||| ||||||||||||||||||| ||||||||    
T  9846971 agagaattacttttcccaccctattgccttctcgcgcgccctgtaaaatttccaaaaatgc 9847031  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 17474237 - 17474292
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||||||| | |||||||||||  |||||||||||||| ||| ||||||||||    
T  17474237 ttacttttcccaccctatggccttctcccgcgccctgtaaaa-ttccaaaaatgccc 17474292  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 44465199 - 44465251
Alignment:
Q  183 ttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatgccc 235  Q
    |||||||| |||||||||||||  |||| ||| ||||||||| ||||||||||    
T  44465199 ttttcccaccttatggccttctcccgcgacctttaaaatttccaaaaatgccc 44465251  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 2540166 - 2540113
Alignment:
Q  179 ttacttttcccaacttatggccttcttgcgcgccctgtaaaatttcgaaaaatg 232  Q
    |||||||||||| | |||||||||||  |||||||||||||||||  |||||||    
T  2540166 ttacttttcccaccctatggccttctcccgcgccctgtaaaattttcaaaaatg 2540113  T

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