View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3892_low_110 (Length: 249)
Name: NF3892_low_110
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_110 |
 | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 238
Target Start/End: Original strand, 53745261 - 53745496
Alignment:
| Q |
3 |
tcttgacccgtgcggtaataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatat |
102 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53745261 |
tcttgacccgtgcggtaatactgtgtagaagttaatcaaatcagtcgcattaatgtaaatatatatagttaatagaaattttagaacaatttaaaaatat |
53745360 |
T |
|
| Q |
103 |
gttcccttctaagacaacaataggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
53745361 |
gttcccttctaagacaacaataggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaatcatcaagatacattacgaaagacttcgt |
53745460 |
T |
|
| Q |
203 |
gataaacaacatttgaggttgtattagtgttctctc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
53745461 |
gataaacaacatttgaggttgtattagtgttctctc |
53745496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 8649651 - 8649837
Alignment:
| Q |
52 |
ttaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacat |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||||||||||||||||| |
|
|
| T |
8649651 |
ttaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaaaaaaggaaaaaaaattaaatggtagcatacat |
8649750 |
T |
|
| Q |
152 |
aacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctctc |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8649751 |
aacaaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctctc |
8649837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 8661458 - 8661644
Alignment:
| Q |
52 |
ttaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacat |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || |||||||||||||||||||||| |
|
|
| T |
8661458 |
ttaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaaaaaaggaaaaaaaattaaatggtagcatacat |
8661557 |
T |
|
| Q |
152 |
aacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctctc |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8661558 |
aacaaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctctc |
8661644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 22206277 - 22206058
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaattt-aaaaatatgttcccttctaagaca |
118 |
Q |
| |
|
||||| ||||||| || ||||||||| || || |||||||||||||||||||| |||||| ||| | | || ||| |||||||||||| ||||||| || |
|
|
| T |
22206277 |
ataccacgtagaaattaatcgaatcaatcgcaataatgtaaacatatatagttgatagaagtttcatatcagttttaaaaatatgttcacttctaatact |
22206178 |
T |
|
| Q |
119 |
acaataggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttga |
218 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22206177 |
acaatagcaacaaaatgaaatggtagcatacataacaaaaaggtttcaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttga |
22206078 |
T |
|
| Q |
219 |
ggttgtattagtgttctctc |
238 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
22206077 |
ggtcttattagtgttctctc |
22206058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 26626129 - 26626296
Alignment:
| Q |
59 |
aaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacataacaaaa |
158 |
Q |
| |
|
|||||||| ||||||||||| ||||| | ||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
26626129 |
aaacatattcagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaataacagcaaaatgaaatggtagcatacataacaaaa |
26626228 |
T |
|
| Q |
159 |
aggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtat |
226 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| |||| |
|
|
| T |
26626229 |
agttttgaacattaaccatcaagatacattacgaaaaacttcgtaataaacaacatttgaggtcgtat |
26626296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 54568416 - 54568609
Alignment:
| Q |
29 |
agaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa |
128 |
Q |
| |
|
||||||| | ||||| ||||||| | |||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||| ||||||||||| || |
|
|
| T |
54568416 |
agaagttaaacgaataagtcacaacactgtaaacatatatagttaatagaagttttaacaaaatttaaaaacatgttcccttctacgacaacaatagcaa |
54568515 |
T |
|
| Q |
129 |
caaaattaaatggtagcatacat-aacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggt |
221 |
Q |
| |
|
|||||| |||||||||||||||| || ||||| || ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54568516 |
caaaatgaaatggtagcatacataaaaaaaaaagtgtgaactttaatcatcaagatacattacgaaagacttcgtgataaacaacatttgaggt |
54568609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 22209344 - 22209231
Alignment:
| Q |
28 |
tagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaatagga |
127 |
Q |
| |
|
|||||||| |||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
22209344 |
tagaagttaatcgaatcagtcgcaaaaatgtaaacatatatagttaatagaagttttataacaatttaaaaatatgttcccttctaagacaacaatagca |
22209245 |
T |
|
| Q |
128 |
acaaaattaaatgg |
141 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
22209244 |
acaaaatgaaatgg |
22209231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 238
Target Start/End: Original strand, 50938423 - 50938534
Alignment:
| Q |
127 |
aacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtat |
226 |
Q |
| |
|
|||||||| ||||||||| | | ||||||||||||||||||||||||| || |||||||||||||||||| ||| |||||||||| |||||||||||||| |
|
|
| T |
50938423 |
aacaaaatgaaatggtagtaaatataacaaaaaggtttgaacattaaccattaagatacattacgaaagaattcatgataaacaatatttgaggttgtat |
50938522 |
T |
|
| Q |
227 |
tagtgttctctc |
238 |
Q |
| |
|
|||| |||||| |
|
|
| T |
50938523 |
cagtgctctctc |
50938534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 161
Target Start/End: Original strand, 31523639 - 31523755
Alignment:
| Q |
45 |
agtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtag |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| || ||| |||||||||||||||||||| |||||||||| || ||||| | |||||| |
|
|
| T |
31523639 |
agtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaataaaatgagatggtaa |
31523738 |
T |
|
| Q |
145 |
catacataacaaaaagg |
161 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
31523739 |
catacataagaaaaagg |
31523755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 23137508 - 23137588
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaat |
100 |
Q |
| |
|
||||| |||||||||| ||||||| | || || ||||||||| ||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23137508 |
ataccacgtagaagttaatcgaattaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaat |
23137588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 238
Target Start/End: Original strand, 24845661 - 24845879
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaa |
119 |
Q |
| |
|
||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24845661 |
ataccacgtagaagttaatcgaatcagtcgcattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaa |
24845760 |
T |
|
| Q |
120 |
caataggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgag |
219 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24845761 |
caaaaggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttgag |
24845860 |
T |
|
| Q |
220 |
gttgtattagtgttctctc |
238 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
24845861 |
gttgtattagtgttctctc |
24845879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23389374 - 23389157
Alignment:
| Q |
1 |
actcttgacccgtgcggtaataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaat |
100 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| || || ||| || |||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
23389374 |
actcttgacccgtgcggta-taccatgtagaagttaattga----gtcgcaataatgtaaacatatatagttaaaagaagttttataacaatttaaaaat |
23389280 |
T |
|
| Q |
101 |
atgttcccttctaagacaacaataggaacaaaattaaatggtagcatac--ataacaaaaaggtttgaacattaactatcaagatacattacgaaagact |
198 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
23389279 |
atgttcccttataagacaacaatagaaacaaaatgaaatggtagcatacatataacaaaaatgtttgaacattaaccatcaagatacattgcgaaagact |
23389180 |
T |
|
| Q |
199 |
tcgtgataaacaacatttgaggt |
221 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
23389179 |
tcgtgataaacaacatttgaggt |
23389157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 28 - 236
Target Start/End: Original strand, 8497726 - 8497935
Alignment:
| Q |
28 |
tagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaattt-aaaaatatgttcccttctaagacaacaatagg |
126 |
Q |
| |
|
||||| || ||||||||| ||||| ||||||||| ||||||| || |||||| ||||| | || ||| |||||||||||| |||||||||||||||||| |
|
|
| T |
8497726 |
tagaatttaatcgaatcattcacaataatgtaaatatatataattgatagaagttttatatcagttttaaaaatatgttcacttctaagacaacaatagc |
8497825 |
T |
|
| Q |
127 |
aacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtat |
226 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
8497826 |
aacaaaatgaaatggtagcatagataacaaaaaggtttgaacattaattatcaagatatattacgaaagacttcgtgataaacaacatttgagatcgtat |
8497925 |
T |
|
| Q |
227 |
tagtgttctc |
236 |
Q |
| |
|
| ||||||| |
|
|
| T |
8497926 |
caatgttctc |
8497935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 27771231 - 27771043
Alignment:
| Q |
29 |
agaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa |
128 |
Q |
| |
|
||||||| | ||||| |||| || |||||||||||||||||||||||||| | ||| || |||||||| |||||||||||||| ||||||||||| || |
|
|
| T |
27771231 |
agaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaa-tatgttcccttctacgacaacaatagcaa |
27771133 |
T |
|
| Q |
129 |
caaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgag |
219 |
Q |
| |
|
|||||| | ||| || |||| | | ||||| |||||||| |||| |||||||||||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
27771132 |
caaaatgagatgataatatacctcagaaaaatgtttgaactttaatcatcaagatacatta-taaaaacttcatgataaacaacatttgag |
27771043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 34416935 - 34416985
Alignment:
| Q |
176 |
atcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34416935 |
atcaagatacattacgaaagacttcgtgataaacaacatttgaggtcgtat |
34416985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 27118793 - 27118858
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaatttta |
85 |
Q |
| |
|
|||||| | ||||||| | ||||| |||| || |||||||||||||||||||||||||| ||||| |
|
|
| T |
27118793 |
ataccgagaagaagttaaacgaatgagtcgcaacaatgtaaacatatatagttaatagaagtttta |
27118858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 37 - 218
Target Start/End: Original strand, 28495471 - 28495653
Alignment:
| Q |
37 |
atcgaatcagtcacattaatgtaaa-catatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaatt |
135 |
Q |
| |
|
||||||||| || || ||||||||| ||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
28495471 |
atcgaatcaatcgcaataatgtaaaacatatttagttaatagaaattttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatg |
28495570 |
T |
|
| Q |
136 |
aaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttga |
218 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28495571 |
aaatggtagcatacataacaaaaagttttgaacattaaccatcaagatacattacgaaagacttcgtgataaacaacatttga |
28495653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 5076943 - 5076759
Alignment:
| Q |
54 |
aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaatt-aaatggtagcatacata |
152 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| ||||||||||| ||||||| | ||| ||||||||||||| |
|
|
| T |
5076943 |
aatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaaaatgaaacggtagcatacata |
5076844 |
T |
|
| Q |
153 |
acaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctct |
237 |
Q |
| |
|
| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
5076843 |
aaaaaaaagtttgaactttaatcatcaagatacattacgaaagacttcgtgataaacaacatttgaggtcgtatcagtattctct |
5076759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 29 - 215
Target Start/End: Complemental strand, 9362207 - 9362021
Alignment:
| Q |
29 |
agaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa |
128 |
Q |
| |
|
||||||| | ||||| |||| || |||||||| ||||||||||||||||| | || || |||| ||||| |||||| ||| || | ||| ||| || |
|
|
| T |
9362207 |
agaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatataaaaattaaaaaacatgttcacttatacaataaccataacaa |
9362108 |
T |
|
| Q |
129 |
caaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatt |
215 |
Q |
| |
|
||||| || ||| ||| ||||||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9362107 |
caaaaatagatgatagaatacatatgaaaaaggtttgaactttaatcatcaagatatattacgaaagacttcgtgataaacaacatt |
9362021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 14988590 - 14988421
Alignment:
| Q |
69 |
agttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacataacaaaaaggtttgaac |
168 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14988590 |
agttaatggaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaacaaaatgaaaaggtagcatacataacaaaaaggtttgaac |
14988491 |
T |
|
| Q |
169 |
attaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctctc |
238 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||| || |||||||||||| ||||||| |||||||| |
|
|
| T |
14988490 |
attaaccatcaagatacattatgaaagacttcgtgattaataacatttgaggtcgtattagcgttctctc |
14988421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 219
Target Start/End: Complemental strand, 12874083 - 12873893
Alignment:
| Q |
29 |
agaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa |
128 |
Q |
| |
|
||||||| | ||||| |||| || |||||||||||||||||||||||||| | ||| || ||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
12874083 |
agaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaatagcaa |
12873984 |
T |
|
| Q |
129 |
caaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgag |
219 |
Q |
| |
|
|||||| | ||| || |||| | | ||||| ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12873983 |
caaaatgagatgataatatacctcagaaaaatatttgaactttaatcatcaagatacattacgaaagacttcatgataaacaacatttgag |
12873893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 16056583 - 16056662
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaa |
99 |
Q |
| |
|
||||| |||||||||| ||||||||| || || ||||||||| ||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
16056583 |
ataccacgtagaagttaatcgaatcaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaa |
16056662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 17288164 - 17287957
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaa-catatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagaca |
118 |
Q |
| |
|
||||| |||| ||||| ||| ||||| || || ||||||||| || || |||||||||||| ||||| | ||||||||||||||||||||| |||||||| |
|
|
| T |
17288164 |
ataccacgtaaaagttaatcaaatcaatcgcaataatgtaaaacagatttagttaatagaagttttatagcaatttaaaaatatgttccctcctaagaca |
17288065 |
T |
|
| Q |
119 |
acaataggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttga |
218 |
Q |
| |
|
||||||| | |||||| ||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17288064 |
acaatagcagcaaaatgaaatggtagcatatataacaaaaagttttgaacattaaccatcaaaatacattacgaaagacttcgtgataaacaacatttga |
17287965 |
T |
|
| Q |
219 |
ggttgtat |
226 |
Q |
| |
|
||| |||| |
|
|
| T |
17287964 |
ggtcgtat |
17287957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 39333001 - 39333139
Alignment:
| Q |
21 |
taccgcgtagaagtttatcgaatcagtcacattaatgta-aacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaa |
119 |
Q |
| |
|
|||| |||| ||||| ||||||||| || || ||||||| || | || ||||| |||||| ||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
39333001 |
taccacgtaaaagttaatcgaatcaatcgcaataatgtacaatagatttagttgatagaagttttatagcaatttaaaaatatgttcccttctaagacaa |
39333100 |
T |
|
| Q |
120 |
caataggaacaaaattaaatggtagcatacataacaaaa |
158 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
39333101 |
caatagcagcaaaatgaaatggtagcatacataacaaaa |
39333139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 49193606 - 49193713
Alignment:
| Q |
54 |
aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacataa |
153 |
Q |
| |
|
||||||||||||||||||||||| || ||||| || ||| |||||||| ||||||||||| |||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
49193606 |
aatgtaaacatatatagttaataaaagttttataaaaatataaaaataagttcccttctactacaacaatagcaacaaaatgagatggtagcatacataa |
49193705 |
T |
|
| Q |
154 |
caaaaagg |
161 |
Q |
| |
|
||||||| |
|
|
| T |
49193706 |
gaaaaagg |
49193713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 45237555 - 45237472
Alignment:
| Q |
155 |
aaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctctc |
238 |
Q |
| |
|
||||||| |||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||||||| |
|
|
| T |
45237555 |
aaaaagggttgaactttaatcatcaagatatattacgaaagacttcgtgataaacaacatttgaggtcgttgtagtattctctc |
45237472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 19039253 - 19039333
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaat |
100 |
Q |
| |
|
||||| ||||||| || ||||||||| || || ||||||||||||||||| ||||||||| ||||| ||||||| |||||| |
|
|
| T |
19039253 |
ataccacgtagaaattaatcgaatcaatcgcaataatgtaaacatatatatttaatagaagttttataacaattaaaaaat |
19039333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 54 - 237
Target Start/End: Complemental strand, 414516 - 414334
Alignment:
| Q |
54 |
aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtagcatacataa |
153 |
Q |
| |
|
||||||||||||||||||| |||||||||||| | ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
414516 |
aatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaaatgaaatggtagcatacataa |
414417 |
T |
|
| Q |
154 |
caaaaaggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtattagtgttctct |
237 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
414416 |
-aaaaaggtttgaactttaatcatcaagatacattaccaaagacttcgtgataaacaacatttgaggtcgtatcagtattctct |
414334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 8813580 - 8813411
Alignment:
| Q |
29 |
agaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa |
128 |
Q |
| |
|
||||||| | ||||| |||| || |||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
8813580 |
agaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagttttaacaaaatttaaaaatatgttcccttctacgacaacaatagcaa |
8813481 |
T |
|
| Q |
129 |
caaaattaaatggtagcatacat--aacaaaaaggtttgaacattaactatcaagatacattacgaaaga |
196 |
Q |
| |
|
|||| | |||||||||||||||| || |||||||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
8813480 |
caaattgaaatggtagcatacataaaaaaaaaaggtttgaactttaatcatcaagatacattatgaaaga |
8813411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 44071379 - 44071476
Alignment:
| Q |
20 |
ataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagaca |
118 |
Q |
| |
|
||||| |||||||||| ||||||| ||| || |||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
44071379 |
ataccacgtagaagttaatcgaattggtcgcaaaaatgtaaacatatataattaatagaagttttataacaattt-aaaatatgttcccttctaagaca |
44071476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 37446795 - 37446975
Alignment:
| Q |
16 |
ggtaataccgcgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaag |
115 |
Q |
| |
|
|||| ||||| | ||||||| | ||||| |||| || ||||||||||||||| |||||||||| ||||| | | |||||||||||||||||||||| | |
|
|
| T |
37446795 |
ggtactaccgagaagaagttaaacgaataagtcgcaacaatgtaaacatatatcgttaatagaagttttaacaaattttaaaaatatgttcccttctacg |
37446894 |
T |
|
| Q |
116 |
acaacaataggaacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaagatacattacgaaaga |
196 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||| |
|
|
| T |
37446895 |
acaacaatagcaacaaaatggaatggtagcatacataaaaaaatggtttgaactttaatcctcaagatacattacgaaaga |
37446975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 14591730 - 14591680
Alignment:
| Q |
176 |
atcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtat |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14591730 |
atcaagatacattacgaaagacttcgtgataaacaacatttgaggtcgtat |
14591680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 16011321 - 16011271
Alignment:
| Q |
176 |
atcaagatacattacgaaagacttcgtgataaacaacatttgaggttgtat |
226 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
16011321 |
atcaagatacattacgaaagacttcatgataaacaacatttgaggtcgtat |
16011271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 46539242 - 46539189
Alignment:
| Q |
127 |
aacaaaattaaatggtagcatacataacaaaaaggtttgaacattaactatcaa |
180 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
46539242 |
aacaaaatgaaatggtagcatatataacaaaaatgtttgaacattaaccatcaa |
46539189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 25839431 - 25839475
Alignment:
| Q |
177 |
tcaagatacattacgaaagacttcgtgataaacaacatttgaggt |
221 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25839431 |
tcaaaatacattatgaaagacttcgtgataaacaacatttgaggt |
25839475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 159
Target Start/End: Complemental strand, 33367861 - 33367747
Alignment:
| Q |
45 |
agtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaacaaaattaaatggtag |
144 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || ||||| || ||| |||||||||||||||||||| |||||||||| |||||||| | ||||||| |
|
|
| T |
33367861 |
agtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaacaaaatgagatggtag |
33367762 |
T |
|
| Q |
145 |
catacataacaaaaa |
159 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
33367761 |
catacataagaaaaa |
33367747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 26700988 - 26701084
Alignment:
| Q |
116 |
acaacaataggaacaaaattaaatggtagcatacataacaaaa-aggtttgaacattaactatcaagatacattacgaaagacttcgtgataaacaa |
211 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||| |||| |||||||||| |||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
26700988 |
acaacaataacaacaaaatgaaatggtagcatacataaaaaaaaaggtttgaactttaatcatcaatatacattacgaaaggcttcgtgataaacaa |
26701084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 33813574 - 33813648
Alignment:
| Q |
26 |
cgtagaagtttatcgaatcagtcacattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaat |
100 |
Q |
| |
|
|||||||||| ||||||||| || || | ||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
33813574 |
cgtagaagttaatcgaatcaatcgcaatcatgtaaacatatatagttattagaagttttataacaatttaaaaat |
33813648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 47309380 - 47309337
Alignment:
| Q |
182 |
atacattacgaaagacttcgtgataaacaacatttgaggttgta |
225 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
47309380 |
atacattacaaaatgcttcgtgataaacaacatttgaggttgta |
47309337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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