View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_113 (Length: 248)
Name: NF3892_low_113
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_113 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 13695834 - 13695604
Alignment:
| Q |
18 |
aagggtgttgtttcttattatttatcatgattcttttcataaattcatgttgtgattttggatatattattgtgaattcattactttcatctgctaaatt |
117 |
Q |
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| T |
13695834 |
aagggtgttgtttcttattatttatcatgattcttttcataaattcatgttgtgattttggatatattattgtgaattcattactttcatatgctaaatt |
13695735 |
T |
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| Q |
118 |
catgattgaaatttagtttctaattatgtgttaagaacgattgctgtatatatgatgctctcgtaaaccgttatgaaactccatgctttcttttggttat |
217 |
Q |
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| T |
13695734 |
tatgattgaaatatagtttctaattatgtgttaagaacgattgctgtatatatgatgctctcgtaaaccgttatgaaactccatgccttcttttggttat |
13695635 |
T |
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| Q |
218 |
tttgattttctcctatatgtttgtactatct |
248 |
Q |
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| T |
13695634 |
tttgattttttcctatatttttgtactatct |
13695604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 13696042 - 13695998
Alignment:
| Q |
18 |
aagggtgttgtttcttattatttatcatgattcttttcataaatt |
62 |
Q |
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| T |
13696042 |
aagggtgttgtttcttattatttatcatgattcttttcataaatt |
13695998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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