View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3892_low_114 (Length: 248)
Name: NF3892_low_114
Description: NF3892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3892_low_114 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 5183911 - 5183670
Alignment:
| Q |
1 |
acatgaattatgctattagtataacaggtttttcagatttattctttattnnnnnnnnctaattcatttattcaaattgatacaattcataggaaacaat |
100 |
Q |
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| T |
5183911 |
acatgaattatgctattagtataagaggtttttcagatttattctttattaaaaaaaactaatttatttattcaaattgatacaattcataggaaacaat |
5183812 |
T |
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| Q |
101 |
acaaattcaaagtcgttaaaattaaagatgatgaatttgcnnnnnnnncttacataatccatgttaatagtatcaattnnnnnnntatcatatgtaatga |
200 |
Q |
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| T |
5183811 |
acaaattcaaagtcgttaaaattaaagatgatgaatttgcgaaaaaaacttacataatccatgttaatagtatcaattaaaaaaatattatatgtaatga |
5183712 |
T |
|
| Q |
201 |
tataaaaaatggttgaaatacccatgcctctgatgatgtcca |
242 |
Q |
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| T |
5183711 |
tatcaaaaatggttgaaatactcatgcctccgataatgtcca |
5183670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 42781451 - 42781379
Alignment:
| Q |
66 |
atttattcaaattgatacaattcataggaaacaatacaaattcaaagtcgttaaaattaaagatgatgaatttg |
139 |
Q |
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| T |
42781451 |
atttattcaaattgatagagtgcatcg-atacaatacaaattcaaagtcgctaaaaataaaaaggatgaatttg |
42781379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 35275764 - 35275808
Alignment:
| Q |
96 |
acaatacaaattcaaagtcgttaaaattaaagatgatgaatttgc |
140 |
Q |
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| T |
35275764 |
acaatacaaattcaaagtcgtaaaaaataaaaaggatgaatttgc |
35275808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 2513347 - 2513385
Alignment:
| Q |
98 |
aatacaaattcaaagtcgttaaaattaaagatgatgaat |
136 |
Q |
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| T |
2513347 |
aatacaaattcaaagtcgttaaaaataaaaatgatgaat |
2513385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 912903 - 912948
Alignment:
| Q |
94 |
aaacaatacaaattcaaagtcgttaaaattaaagatgatgaatttg |
139 |
Q |
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| T |
912903 |
aaacaacacaaattcaacgtcgttaaaactaaaaatgatgaatttg |
912948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 201777 - 201821
Alignment:
| Q |
96 |
acaatacaaattcaaagtcgttaaaattaaagatgatgaatttgc |
140 |
Q |
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| T |
201777 |
acaatacaaattcaaagtcgtttaaagtaaaaaggatgaatttgc |
201821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 2522787 - 2522827
Alignment:
| Q |
96 |
acaatacaaattcaaagtcgttaaaattaaagatgatgaat |
136 |
Q |
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| T |
2522787 |
acaatacaaattcaaagtcgctaaaaataaaaatgatgaat |
2522827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 20607154 - 20607194
Alignment:
| Q |
96 |
acaatacaaattcaaagtcgttaaaattaaagatgatgaat |
136 |
Q |
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| T |
20607154 |
acaatacaaattcaaagtcgctaaaaataaaaatgatgaat |
20607194 |
T |
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